diff test-data/dreme_output_test2.txt @ 5:f33d77dcacce draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"

--- a/test-data/dreme_output_test2.txt	Sat Nov 27 14:39:01 2021 +0000
+++ b/test-data/dreme_output_test2.txt	Sat Apr 09 08:32:58 2022 +0000
@@ -1,7 +1,3 @@
-# DREME 5.0.5
-#   negatives: 1000 from shuffled positives
-
-MEME version 5.0.5
 ALPHABET "RNA" RNA-LIKE
 A "Adenine" CC0000
 C "Cytosine" 0000CC
@@ -22,15 +18,20 @@
 K "Keto" = GU
 T = U
 END ALPHABET
+
 Background letter frequencies (from dataset):
 A 0.221 C 0.245 G 0.221 U 0.312
+
+
 MOTIF UUYUCY DREME-1
+
 #             Word        Pos        Neg    P-value    E-value
 # BEST      UUYUCY        387        210   2.6e-018   3.3e-013
 #           UUUUCC        147         75   1.8e-007   2.2e-002
 #           UUUUCU        155         94   2.2e-005   2.8e+000
 #           UUCUCU         94         51   1.3e-004   1.7e+001
 #           UUCUCC         75         42   1.1e-003   1.4e+002
+
 letter-probability matrix: alength= 4 w= 6 nsites= 459 E= 3.3e-013
 0.000000 0.000000 0.000000 1.000000
 0.000000 0.000000 0.000000 1.000000
@@ -38,14 +39,17 @@
 0.000000 0.000000 0.000000 1.000000
 0.000000 1.000000 0.000000 0.000000
 0.000000 0.474946 0.000000 0.525054
+
+
 MOTIF YAGG DREME-2
+
 #             Word        Pos        Neg    P-value    E-value
 # BEST        YAGG        600        416   1.1e-016   1.4e-011
 #             CAGG        441        304   1.5e-010   1.8e-005
 #             UAGG        232        165   1.1e-004   1.3e+001
+
 letter-probability matrix: alength= 4 w= 4 nsites= 793 E= 1.4e-011
 0.000000 0.692308 0.000000 0.307692
 1.000000 0.000000 0.000000 0.000000
 0.000000 0.000000 1.000000 0.000000
-0.000000 0.000000 1.000000 0.000000
-# Stopping reason: E-value threshold exceeded
+0.000000 0.000000 1.000000 0.000000
\ No newline at end of file