FIMO Results

FIMO - Motif search tool

FIMO version 4.11.0, (Release date: Thu Nov 26 17:48:49 2015 +1000)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]

DATABASE AND MOTIFS

  DATABASE /Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2541.dat
  
  Database contains 1 sequences, 5386 residues

  MOTIFS /Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2540.dat (Protein)
  
        MOTIF
        WIDTH
        
         BEST POSSIBLE MATCH
        
        1
        11
        GGGGTATAAAA
       
Random model letter frequencies (from non-redundant database):

A 0.073 C 0.018 D 0.052 E 0.062 F 0.040 G 0.069 H 0.022 I 0.056 K 0.058 
L 0.092 M 0.023 N 0.046 P 0.051 Q 0.041 R 0.052 S 0.074 T 0.059 V 0.064 
W 0.013 Y 0.033

MOTIF	WIDTH	BEST POSSIBLE MATCH
1	11	GGGGTATAAAA

SECTION I: HIGH-SCORING MOTIF OCCURENCES

There were 1937 motif occurences with a p-value less than 0.0001. Only the most significant 1000 matches are shown here. The full set of motif occurences can be seen in the tab-delimited plain text output file fimo.txt, the GFF file fimo.gff which may be suitable for uploading to the UCSC Genome Table Browser (assuming the FASTA input sequences included genomic coordinates in UCSC or Galaxy format), or the XML file fimo.xml.
The p-value of a motif occurrence is defined as the probability of a random sequence of the same length as the motif matching that position of the sequence with as good or better a score.