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comparison test-data/meme_output_txt_2.txt @ 5:eca84de658b0 draft

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author iuc
date Fri, 17 Jun 2016 13:15:48 -0400
parents fd522a964017
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4:cd54079f0f72 5:eca84de658b0
53 COMMAND LINE SUMMARY 53 COMMAND LINE SUMMARY
54 ******************************************************************************** 54 ********************************************************************************
55 This information can also be useful in the event you wish to report a 55 This information can also be useful in the event you wish to report a
56 problem with the MEME software. 56 problem with the MEME software.
57 57
58 command: meme /Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2490.dat -o /Users/gvk/work/git_workspace/galaxy/database/job_working_directory/001/1929/dataset_2578_files -nostatus -sf Galaxy_FASTA_Input -dna -mod zoops -nmotifs 1 -wnsites 0.8 -minw 8 -maxw 50 -wg 11 -ws 1 -maxiter 50 -distance 0.001 -prior dirichlet -b 0.01 -plib /Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2577.dat -spmap uni -spfuzz 0.5 58 command: meme
59 59
60 model: mod= zoops nmotifs= 1 evt= inf 60 model: mod= zoops nmotifs= 1 evt= inf
61 object function= E-value of product of p-values 61 object function= E-value of product of p-values
62 width: minw= 8 maxw= 50 62 width: minw= 8 maxw= 50
63 width: wg= 11 ws= 1 endgaps= yes 63 width: wg= 11 ws= 1 endgaps= yes
67 em: prior= dirichlet b= 0.01 maxiter= 50 67 em: prior= dirichlet b= 0.01 maxiter= 50
68 distance= 0.001 68 distance= 0.001
69 data: n= 1500 N= 30 shuffle= -1 69 data: n= 1500 N= 30 shuffle= -1
70 strands: + 70 strands: +
71 sample: seed= 0 ctfrac= -1 maxwords= -1 71 sample: seed= 0 ctfrac= -1 maxwords= -1
72 Dirichlet mixture priors file: dataset_2577.dat 72 Dirichlet mixture priors file:
73 Letter frequencies in dataset: 73 Letter frequencies in dataset:
74 A 0.294 C 0.231 G 0.257 T 0.217 74 A 0.294 C 0.231 G 0.257 T 0.217
75 Background letter frequencies (from dataset with add-one prior applied): 75 Background letter frequencies (from dataset with add-one prior applied):
76 A 0.294 C 0.231 G 0.257 T 0.217 76 A 0.294 C 0.231 G 0.257 T 0.217
77 ******************************************************************************** 77 ********************************************************************************
259 -------------------------------------------------------------------------------- 259 --------------------------------------------------------------------------------
260 260
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263 263
264 Time 0.17 secs. 264 Time
265 265
266 ******************************************************************************** 266 ********************************************************************************
267 267
268 268
269 ******************************************************************************** 269 ********************************************************************************
312 312
313 ******************************************************************************** 313 ********************************************************************************
314 Stopped because requested number of motifs (1) found. 314 Stopped because requested number of motifs (1) found.
315 ******************************************************************************** 315 ********************************************************************************
316 316
317 CPU: dot1x-cb-51.aset.psu.edu 317 CPU:
318 318
319 ******************************************************************************** 319 ********************************************************************************