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comparison test-data/meme_output_xml_1.xml @ 0:fd522a964017 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e96df94dba60050fa28aaf55b5bb095717a5f260
author iuc
date Tue, 22 Dec 2015 17:01:51 -0500
parents
children 53846f74a019
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1 <?xml version='1.0' encoding='UTF-8' standalone='yes'?>
2 <!-- Document definition -->
3 <!DOCTYPE MEME[
4 <!ELEMENT MEME (
5 training_set,
6 model,
7 motifs,
8 scanned_sites_summary?
9 )>
10 <!ATTLIST MEME
11 version CDATA #REQUIRED
12 release CDATA #REQUIRED
13 >
14 <!-- Training-set elements -->
15 <!ELEMENT training_set (alphabet, ambigs, sequence*, letter_frequencies)>
16 <!ATTLIST training_set datafile CDATA #REQUIRED length CDATA #REQUIRED>
17 <!ELEMENT alphabet (letter*)>
18 <!ATTLIST alphabet name CDATA #REQUIRED>
19 <!ELEMENT ambigs (letter*)>
20 <!ELEMENT letter EMPTY>
21 <!ATTLIST letter id ID #REQUIRED>
22 <!ATTLIST letter symbol CDATA #REQUIRED>
23 <!ATTLIST letter equals CDATA #IMPLIED>
24 <!ATTLIST letter aliases CDATA #IMPLIED>
25 <!ATTLIST letter complement CDATA #IMPLIED>
26 <!ATTLIST letter name CDATA #IMPLIED>
27 <!ATTLIST letter colour CDATA #IMPLIED>
28 <!ELEMENT sequence EMPTY>
29 <!ATTLIST sequence id ID #REQUIRED
30 name CDATA #REQUIRED
31 length CDATA #REQUIRED
32 weight CDATA #REQUIRED
33 >
34 <!ELEMENT letter_frequencies (alphabet_array)>
35
36 <!-- Model elements -->
37 <!ELEMENT model (
38 command_line,
39 host,
40 type,
41 nmotifs,
42 evalue_threshold,
43 object_function,
44 min_width,
45 max_width,
46 minic,
47 wg,
48 ws,
49 endgaps,
50 minsites,
51 maxsites,
52 wnsites,
53 prob,
54 spmap,
55 spfuzz,
56 prior,
57 beta,
58 maxiter,
59 distance,
60 num_sequences,
61 num_positions,
62 seed,
63 seqfrac,
64 strands,
65 priors_file,
66 reason_for_stopping,
67 background_frequencies
68 )>
69 <!ELEMENT command_line (#PCDATA)*>
70 <!ELEMENT host (#PCDATA)*>
71 <!ELEMENT type (#PCDATA)*>
72 <!ELEMENT nmotifs (#PCDATA)*>
73 <!ELEMENT evalue_threshold (#PCDATA)*>
74 <!ELEMENT object_function (#PCDATA)*>
75 <!ELEMENT min_width (#PCDATA)*>
76 <!ELEMENT max_width (#PCDATA)*>
77 <!ELEMENT minic (#PCDATA)*>
78 <!ELEMENT wg (#PCDATA)*>
79 <!ELEMENT ws (#PCDATA)*>
80 <!ELEMENT endgaps (#PCDATA)*>
81 <!ELEMENT minsites (#PCDATA)*>
82 <!ELEMENT maxsites (#PCDATA)*>
83 <!ELEMENT wnsites (#PCDATA)*>
84 <!ELEMENT prob (#PCDATA)*>
85 <!ELEMENT spmap (#PCDATA)*>
86 <!ELEMENT spfuzz (#PCDATA)*>
87 <!ELEMENT prior (#PCDATA)*>
88 <!ELEMENT beta (#PCDATA)*>
89 <!ELEMENT maxiter (#PCDATA)*>
90 <!ELEMENT distance (#PCDATA)*>
91 <!ELEMENT num_sequences (#PCDATA)*>
92 <!ELEMENT num_positions (#PCDATA)*>
93 <!ELEMENT seed (#PCDATA)*>
94 <!ELEMENT seqfrac (#PCDATA)*>
95 <!ELEMENT strands (#PCDATA)*>
96 <!ELEMENT priors_file (#PCDATA)*>
97 <!ELEMENT reason_for_stopping (#PCDATA)*>
98 <!ELEMENT background_frequencies (alphabet_array)>
99 <!ATTLIST background_frequencies source CDATA #REQUIRED>
100
101 <!-- Motif elements -->
102 <!ELEMENT motifs (motif*)>
103 <!ELEMENT motif (scores, probabilities, regular_expression?, contributing_sites)>
104 <!ATTLIST motif id ID #REQUIRED
105 name CDATA #REQUIRED
106 width CDATA #REQUIRED
107 sites CDATA #REQUIRED
108 llr CDATA #REQUIRED
109 ic CDATA #REQUIRED
110 re CDATA #REQUIRED
111 bayes_threshold CDATA #REQUIRED
112 e_value CDATA #REQUIRED
113 elapsed_time CDATA #REQUIRED
114 url CDATA ""
115 >
116 <!ELEMENT scores (alphabet_matrix)>
117 <!ELEMENT probabilities (alphabet_matrix)>
118 <!ELEMENT regular_expression (#PCDATA)*>
119
120 <!-- Contributing site elements -->
121 <!-- Contributing sites are motif occurences found during the motif discovery phase -->
122 <!ELEMENT contributing_sites (contributing_site*)>
123 <!ELEMENT contributing_site (left_flank, site, right_flank)>
124 <!ATTLIST contributing_site sequence_id IDREF #REQUIRED
125 position CDATA #REQUIRED
126 strand (plus|minus|none) 'none'
127 pvalue CDATA #REQUIRED
128 >
129 <!-- The left_flank contains the sequence for 10 bases to the left of the motif start -->
130 <!ELEMENT left_flank (#PCDATA)>
131 <!-- The site contains the sequence for the motif instance -->
132 <!ELEMENT site (letter_ref*)>
133 <!-- The right_flank contains the sequence for 10 bases to the right of the motif end -->
134 <!ELEMENT right_flank (#PCDATA)>
135
136 <!-- Scanned site elements -->
137 <!-- Scanned sites are motif occurences found during the sequence scan phase -->
138 <!ELEMENT scanned_sites_summary (scanned_sites*)>
139 <!ATTLIST scanned_sites_summary p_thresh CDATA #REQUIRED>
140 <!ELEMENT scanned_sites (scanned_site*)>
141 <!ATTLIST scanned_sites sequence_id IDREF #REQUIRED
142 pvalue CDATA #REQUIRED
143 num_sites CDATA #REQUIRED>
144 <!ELEMENT scanned_site EMPTY>
145 <!ATTLIST scanned_site motif_id IDREF #REQUIRED
146 strand (plus|minus|none) 'none'
147 position CDATA #REQUIRED
148 pvalue CDATA #REQUIRED>
149
150 <!-- Utility elements -->
151 <!-- A reference to a letter in the alphabet -->
152 <!ELEMENT letter_ref EMPTY>
153 <!ATTLIST letter_ref letter_id IDREF #REQUIRED>
154 <!-- A alphabet-array contains one floating point value for each letter in an alphabet -->
155 <!ELEMENT alphabet_array (value*)>
156 <!ELEMENT value (#PCDATA)>
157 <!ATTLIST value letter_id IDREF #REQUIRED>
158
159 <!-- A alphabet_matrix contains one alphabet_array for each position in a motif -->
160 <!ELEMENT alphabet_matrix (alphabet_array*)>
161
162 ]>
163 <!-- Begin document body -->
164 <MEME version="4.11.0" release="Thu Nov 26 17:48:49 2015 +1000">
165 <training_set datafile="/Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2490.dat" length="30">
166 <alphabet name="Protein" like="protein">
167 <letter id="A" symbol="A" name="Alanine" colour="0000CC"/>
168 <letter id="C" symbol="C" name="Cysteine" colour="0000CC"/>
169 <letter id="D" symbol="D" name="Aspartic acid" colour="FF00FF"/>
170 <letter id="E" symbol="E" name="Glutamic acid" colour="FF00FF"/>
171 <letter id="F" symbol="F" name="Phenylalanine" colour="0000CC"/>
172 <letter id="G" symbol="G" name="Glycine" colour="FFB300"/>
173 <letter id="H" symbol="H" name="Histidine" colour="FFCCCC"/>
174 <letter id="I" symbol="I" name="Isoleucine" colour="0000CC"/>
175 <letter id="K" symbol="K" name="Lysine" colour="CC0000"/>
176 <letter id="L" symbol="L" name="Leucine" colour="0000CC"/>
177 <letter id="M" symbol="M" name="Methionine" colour="0000CC"/>
178 <letter id="N" symbol="N" name="Asparagine" colour="008000"/>
179 <letter id="P" symbol="P" name="Proline" colour="FFFF00"/>
180 <letter id="Q" symbol="Q" name="Glutamine" colour="008000"/>
181 <letter id="R" symbol="R" name="Arginine" colour="CC0000"/>
182 <letter id="S" symbol="S" name="Serine" colour="008000"/>
183 <letter id="T" symbol="T" name="Threonine" colour="008000"/>
184 <letter id="V" symbol="V" name="Valine" colour="0000CC"/>
185 <letter id="W" symbol="W" name="Tryptophan" colour="0000CC"/>
186 <letter id="Y" symbol="Y" name="Tyrosine" colour="33E6CC"/>
187 <letter id="X" symbol="X" aliases="*." equals="ACDEFGHIKLMNPQRSTVWY" name="Any amino acid"/>
188 <letter id="B" symbol="B" equals="DN" name="Asparagine or Aspartic acid"/>
189 <letter id="Z" symbol="Z" equals="EQ" name="Glutamine or Glutamic acid"/>
190 <letter id="J" symbol="J" equals="IL" name="Leucine or Isoleucine"/>
191 </alphabet>
192 <sequence id="sequence_0" name="chr21_19617074_19617124_+" length="50" weight="1.000000" />
193 <sequence id="sequence_1" name="chr21_26934381_26934431_+" length="50" weight="1.000000" />
194 <sequence id="sequence_2" name="chr21_28217753_28217803_-" length="50" weight="1.000000" />
195 <sequence id="sequence_3" name="chr21_31710037_31710087_-" length="50" weight="1.000000" />
196 <sequence id="sequence_4" name="chr21_31744582_31744632_-" length="50" weight="1.000000" />
197 <sequence id="sequence_5" name="chr21_31768316_31768366_+" length="50" weight="1.000000" />
198 <sequence id="sequence_6" name="chr21_31914206_31914256_-" length="50" weight="1.000000" />
199 <sequence id="sequence_7" name="chr21_31933633_31933683_-" length="50" weight="1.000000" />
200 <sequence id="sequence_8" name="chr21_31962741_31962791_-" length="50" weight="1.000000" />
201 <sequence id="sequence_9" name="chr21_31964683_31964733_+" length="50" weight="1.000000" />
202 <sequence id="sequence_10" name="chr21_31973364_31973414_+" length="50" weight="1.000000" />
203 <sequence id="sequence_11" name="chr21_31992870_31992920_+" length="50" weight="1.000000" />
204 <sequence id="sequence_12" name="chr21_32185595_32185645_-" length="50" weight="1.000000" />
205 <sequence id="sequence_13" name="chr21_32202076_32202126_-" length="50" weight="1.000000" />
206 <sequence id="sequence_14" name="chr21_32253899_32253949_-" length="50" weight="1.000000" />
207 <sequence id="sequence_15" name="chr21_32410820_32410870_-" length="50" weight="1.000000" />
208 <sequence id="sequence_16" name="chr21_36411748_36411798_-" length="50" weight="1.000000" />
209 <sequence id="sequence_17" name="chr21_37838750_37838800_-" length="50" weight="1.000000" />
210 <sequence id="sequence_18" name="chr21_45705687_45705737_+" length="50" weight="1.000000" />
211 <sequence id="sequence_19" name="chr21_45971413_45971463_-" length="50" weight="1.000000" />
212 <sequence id="sequence_20" name="chr21_45978668_45978718_-" length="50" weight="1.000000" />
213 <sequence id="sequence_21" name="chr21_45993530_45993580_+" length="50" weight="1.000000" />
214 <sequence id="sequence_22" name="chr21_46020421_46020471_+" length="50" weight="1.000000" />
215 <sequence id="sequence_23" name="chr21_46031920_46031970_+" length="50" weight="1.000000" />
216 <sequence id="sequence_24" name="chr21_46046964_46047014_+" length="50" weight="1.000000" />
217 <sequence id="sequence_25" name="chr21_46057197_46057247_+" length="50" weight="1.000000" />
218 <sequence id="sequence_26" name="chr21_46086869_46086919_-" length="50" weight="1.000000" />
219 <sequence id="sequence_27" name="chr21_46102103_46102153_-" length="50" weight="1.000000" />
220 <sequence id="sequence_28" name="chr21_47517957_47518007_+" length="50" weight="1.000000" />
221 <sequence id="sequence_29" name="chr21_47575506_47575556_-" length="50" weight="1.000000" />
222 <letter_frequencies>
223 <alphabet_array>
224 <value letter_id="A">0.294</value>
225 <value letter_id="C">0.231</value>
226 <value letter_id="D">0.000</value>
227 <value letter_id="E">0.000</value>
228 <value letter_id="F">0.000</value>
229 <value letter_id="G">0.257</value>
230 <value letter_id="H">0.000</value>
231 <value letter_id="I">0.000</value>
232 <value letter_id="K">0.000</value>
233 <value letter_id="L">0.000</value>
234 <value letter_id="M">0.000</value>
235 <value letter_id="N">0.000</value>
236 <value letter_id="P">0.000</value>
237 <value letter_id="Q">0.000</value>
238 <value letter_id="R">0.000</value>
239 <value letter_id="S">0.000</value>
240 <value letter_id="T">0.217</value>
241 <value letter_id="V">0.000</value>
242 <value letter_id="W">0.000</value>
243 <value letter_id="Y">0.000</value>
244 </alphabet_array>
245 </letter_frequencies>
246 </training_set>
247 <model>
248 <command_line>meme /Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2490.dat -o /Users/gvk/work/git_workspace/galaxy/database/job_working_directory/001/1912/dataset_2530_files -nostatus </command_line>
249 <host>MacBook-Pro-2.local</host>
250 <type>zoops</type>
251 <nmotifs>1</nmotifs>
252 <evalue_threshold>inf</evalue_threshold>
253 <object_function>E-value of product of p-values</object_function>
254 <use_llr>0</use_llr>
255 <min_width>8</min_width>
256 <max_width>50</max_width>
257 <wg>11</wg>
258 <ws>1</ws>
259 <endgaps>yes</endgaps>
260 <substring>yes</substring>
261 <minsites>2</minsites>
262 <maxsites>30</maxsites>
263 <wnsites>0.8</wnsites>
264 <spmap>pam</spmap>
265 <spfuzz>120</spfuzz>
266 <prior>megap</prior>
267 <beta>7500</beta>
268 <maxiter>50</maxiter>
269 <distance>1e-05</distance>
270 <num_sequences>30</num_sequences>
271 <num_positions>1500</num_positions>
272 <seed>0</seed>
273 <ctfrac>-1</ctfrac>
274 <maxwords>-1</maxwords>
275 <strands>none</strands>
276 <priors_file>prior30.plib</priors_file>
277 <reason_for_stopping>Stopped because requested number of motifs (1) found.</reason_for_stopping>
278 <background_frequencies source="dataset with add-one prior applied">
279 <alphabet_array>
280 <value letter_id="A">0.291</value>
281 <value letter_id="C">0.229</value>
282 <value letter_id="D">0.001</value>
283 <value letter_id="E">0.001</value>
284 <value letter_id="F">0.001</value>
285 <value letter_id="G">0.255</value>
286 <value letter_id="H">0.001</value>
287 <value letter_id="I">0.001</value>
288 <value letter_id="K">0.001</value>
289 <value letter_id="L">0.001</value>
290 <value letter_id="M">0.001</value>
291 <value letter_id="N">0.001</value>
292 <value letter_id="P">0.001</value>
293 <value letter_id="Q">0.001</value>
294 <value letter_id="R">0.001</value>
295 <value letter_id="S">0.001</value>
296 <value letter_id="T">0.215</value>
297 <value letter_id="V">0.001</value>
298 <value letter_id="W">0.001</value>
299 <value letter_id="Y">0.001</value>
300 </alphabet_array>
301 </background_frequencies>
302 </model>
303 <motifs>
304 <motif id="motif_1" name="1" width="11" sites="25" ic="40.0" re="13.8" llr="239" e_value="2.4e-011" bayes_threshold="5.33554" elapsed_time="0.533107">
305 <scores>
306 <alphabet_matrix>
307 <alphabet_array>
308 <value letter_id="A">-32</value>
309 <value letter_id="C">-680</value>
310 <value letter_id="D">91</value>
311 <value letter_id="E">77</value>
312 <value letter_id="F">7</value>
313 <value letter_id="G">138</value>
314 <value letter_id="H">-20</value>
315 <value letter_id="I">55</value>
316 <value letter_id="K">64</value>
317 <value letter_id="L">107</value>
318 <value letter_id="M">11</value>
319 <value letter_id="N">150</value>
320 <value letter_id="P">142</value>
321 <value letter_id="Q">72</value>
322 <value letter_id="R">87</value>
323 <value letter_id="S">396</value>
324 <value letter_id="T">-148</value>
325 <value letter_id="V">221</value>
326 <value letter_id="W">-140</value>
327 <value letter_id="Y">-36</value>
328 </alphabet_array>
329 <alphabet_array>
330 <value letter_id="A">-11</value>
331 <value letter_id="C">-680</value>
332 <value letter_id="D">89</value>
333 <value letter_id="E">76</value>
334 <value letter_id="F">7</value>
335 <value letter_id="G">137</value>
336 <value letter_id="H">-21</value>
337 <value letter_id="I">55</value>
338 <value letter_id="K">63</value>
339 <value letter_id="L">107</value>
340 <value letter_id="M">10</value>
341 <value letter_id="N">149</value>
342 <value letter_id="P">141</value>
343 <value letter_id="Q">71</value>
344 <value letter_id="R">87</value>
345 <value letter_id="S">396</value>
346 <value letter_id="T">-239</value>
347 <value letter_id="V">220</value>
348 <value letter_id="W">-140</value>
349 <value letter_id="Y">-36</value>
350 </alphabet_array>
351 <alphabet_array>
352 <value letter_id="A">-79</value>
353 <value letter_id="C">41</value>
354 <value letter_id="D">4</value>
355 <value letter_id="E">21</value>
356 <value letter_id="F">-7</value>
357 <value letter_id="G">44</value>
358 <value letter_id="H">-62</value>
359 <value letter_id="I">42</value>
360 <value letter_id="K">-5</value>
361 <value letter_id="L">99</value>
362 <value letter_id="M">0</value>
363 <value letter_id="N">99</value>
364 <value letter_id="P">138</value>
365 <value letter_id="Q">52</value>
366 <value letter_id="R">42</value>
367 <value letter_id="S">399</value>
368 <value letter_id="T">-46</value>
369 <value letter_id="V">223</value>
370 <value letter_id="W">-173</value>
371 <value letter_id="Y">-68</value>
372 </alphabet_array>
373 <alphabet_array>
374 <value letter_id="A">11</value>
375 <value letter_id="C">-677</value>
376 <value letter_id="D">48</value>
377 <value letter_id="E">47</value>
378 <value letter_id="F">-2</value>
379 <value letter_id="G">127</value>
380 <value letter_id="H">-43</value>
381 <value letter_id="I">46</value>
382 <value letter_id="K">27</value>
383 <value letter_id="L">101</value>
384 <value letter_id="M">3</value>
385 <value letter_id="N">124</value>
386 <value letter_id="P">138</value>
387 <value letter_id="Q">60</value>
388 <value letter_id="R">62</value>
389 <value letter_id="S">397</value>
390 <value letter_id="T">-235</value>
391 <value letter_id="V">220</value>
392 <value letter_id="W">-160</value>
393 <value letter_id="Y">-55</value>
394 </alphabet_array>
395 <alphabet_array>
396 <value letter_id="A">-596</value>
397 <value letter_id="C">-820</value>
398 <value letter_id="D">12</value>
399 <value letter_id="E">-21</value>
400 <value letter_id="F">-53</value>
401 <value letter_id="G">-267</value>
402 <value letter_id="H">-74</value>
403 <value letter_id="I">37</value>
404 <value letter_id="K">16</value>
405 <value letter_id="L">44</value>
406 <value letter_id="M">-37</value>
407 <value letter_id="N">98</value>
408 <value letter_id="P">31</value>
409 <value letter_id="Q">9</value>
410 <value letter_id="R">19</value>
411 <value letter_id="S">319</value>
412 <value letter_id="T">212</value>
413 <value letter_id="V">127</value>
414 <value letter_id="W">-193</value>
415 <value letter_id="Y">-95</value>
416 </alphabet_array>
417 <alphabet_array>
418 <value letter_id="A">165</value>
419 <value letter_id="C">-261</value>
420 <value letter_id="D">70</value>
421 <value letter_id="E">110</value>
422 <value letter_id="F">77</value>
423 <value letter_id="G">-521</value>
424 <value letter_id="H">-4</value>
425 <value letter_id="I">147</value>
426 <value letter_id="K">95</value>
427 <value letter_id="L">201</value>
428 <value letter_id="M">90</value>
429 <value letter_id="N">121</value>
430 <value letter_id="P">124</value>
431 <value letter_id="Q">91</value>
432 <value letter_id="R">107</value>
433 <value letter_id="S">425</value>
434 <value letter_id="T">-527</value>
435 <value letter_id="V">314</value>
436 <value letter_id="W">-95</value>
437 <value letter_id="Y">8</value>
438 </alphabet_array>
439 <alphabet_array>
440 <value letter_id="A">-838</value>
441 <value letter_id="C">-990</value>
442 <value letter_id="D">-89</value>
443 <value letter_id="E">-149</value>
444 <value letter_id="F">-151</value>
445 <value letter_id="G">-841</value>
446 <value letter_id="H">-161</value>
447 <value letter_id="I">-117</value>
448 <value letter_id="K">-113</value>
449 <value letter_id="L">-66</value>
450 <value letter_id="M">-209</value>
451 <value letter_id="N">-68</value>
452 <value letter_id="P">-69</value>
453 <value letter_id="Q">-129</value>
454 <value letter_id="R">-91</value>
455 <value letter_id="S">111</value>
456 <value letter_id="T">221</value>
457 <value letter_id="V">-55</value>
458 <value letter_id="W">-255</value>
459 <value letter_id="Y">-173</value>
460 </alphabet_array>
461 <alphabet_array>
462 <value letter_id="A">176</value>
463 <value letter_id="C">-858</value>
464 <value letter_id="D">-79</value>
465 <value letter_id="E">-103</value>
466 <value letter_id="F">-115</value>
467 <value letter_id="G">-717</value>
468 <value letter_id="H">-148</value>
469 <value letter_id="I">-95</value>
470 <value letter_id="K">-108</value>
471 <value letter_id="L">-17</value>
472 <value letter_id="M">-162</value>
473 <value letter_id="N">-61</value>
474 <value letter_id="P">-12</value>
475 <value letter_id="Q">-95</value>
476 <value letter_id="R">-69</value>
477 <value letter_id="S">193</value>
478 <value letter_id="T">-737</value>
479 <value letter_id="V">52</value>
480 <value letter_id="W">-240</value>
481 <value letter_id="Y">-153</value>
482 </alphabet_array>
483 <alphabet_array>
484 <value letter_id="A">134</value>
485 <value letter_id="C">-686</value>
486 <value letter_id="D">0</value>
487 <value letter_id="E">16</value>
488 <value letter_id="F">-12</value>
489 <value letter_id="G">-553</value>
490 <value letter_id="H">-68</value>
491 <value letter_id="I">44</value>
492 <value letter_id="K">-8</value>
493 <value letter_id="L">96</value>
494 <value letter_id="M">-9</value>
495 <value letter_id="N">88</value>
496 <value letter_id="P">124</value>
497 <value letter_id="Q">41</value>
498 <value letter_id="R">36</value>
499 <value letter_id="S">384</value>
500 <value letter_id="T">11</value>
501 <value letter_id="V">216</value>
502 <value letter_id="W">-177</value>
503 <value letter_id="Y">-71</value>
504 </alphabet_array>
505 <alphabet_array>
506 <value letter_id="A">165</value>
507 <value letter_id="C">-261</value>
508 <value letter_id="D">70</value>
509 <value letter_id="E">110</value>
510 <value letter_id="F">77</value>
511 <value letter_id="G">-521</value>
512 <value letter_id="H">-4</value>
513 <value letter_id="I">147</value>
514 <value letter_id="K">95</value>
515 <value letter_id="L">201</value>
516 <value letter_id="M">90</value>
517 <value letter_id="N">121</value>
518 <value letter_id="P">124</value>
519 <value letter_id="Q">91</value>
520 <value letter_id="R">107</value>
521 <value letter_id="S">425</value>
522 <value letter_id="T">-527</value>
523 <value letter_id="V">314</value>
524 <value letter_id="W">-95</value>
525 <value letter_id="Y">8</value>
526 </alphabet_array>
527 <alphabet_array>
528 <value letter_id="A">147</value>
529 <value letter_id="C">-614</value>
530 <value letter_id="D">89</value>
531 <value letter_id="E">129</value>
532 <value letter_id="F">93</value>
533 <value letter_id="G">-121</value>
534 <value letter_id="H">12</value>
535 <value letter_id="I">160</value>
536 <value letter_id="K">113</value>
537 <value letter_id="L">217</value>
538 <value letter_id="M">108</value>
539 <value letter_id="N">144</value>
540 <value letter_id="P">144</value>
541 <value letter_id="Q">111</value>
542 <value letter_id="R">125</value>
543 <value letter_id="S">447</value>
544 <value letter_id="T">-241</value>
545 <value letter_id="V">332</value>
546 <value letter_id="W">-81</value>
547 <value letter_id="Y">22</value>
548 </alphabet_array>
549 </alphabet_matrix>
550 </scores>
551 <probabilities>
552 <alphabet_matrix>
553 <alphabet_array>
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555 <value letter_id="C">0.000000</value>
556 <value letter_id="D">0.000000</value>
557 <value letter_id="E">0.000000</value>
558 <value letter_id="F">0.000000</value>
559 <value letter_id="G">0.680000</value>
560 <value letter_id="H">0.000000</value>
561 <value letter_id="I">0.000000</value>
562 <value letter_id="K">0.000000</value>
563 <value letter_id="L">0.000000</value>
564 <value letter_id="M">0.000000</value>
565 <value letter_id="N">0.000000</value>
566 <value letter_id="P">0.000000</value>
567 <value letter_id="Q">0.000000</value>
568 <value letter_id="R">0.000000</value>
569 <value letter_id="S">0.000000</value>
570 <value letter_id="T">0.080000</value>
571 <value letter_id="V">0.000000</value>
572 <value letter_id="W">0.000000</value>
573 <value letter_id="Y">0.000000</value>
574 </alphabet_array>
575 <alphabet_array>
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577 <value letter_id="C">0.000000</value>
578 <value letter_id="D">0.000000</value>
579 <value letter_id="E">0.000000</value>
580 <value letter_id="F">0.000000</value>
581 <value letter_id="G">0.680000</value>
582 <value letter_id="H">0.000000</value>
583 <value letter_id="I">0.000000</value>
584 <value letter_id="K">0.000000</value>
585 <value letter_id="L">0.000000</value>
586 <value letter_id="M">0.000000</value>
587 <value letter_id="N">0.000000</value>
588 <value letter_id="P">0.000000</value>
589 <value letter_id="Q">0.000000</value>
590 <value letter_id="R">0.000000</value>
591 <value letter_id="S">0.000000</value>
592 <value letter_id="T">0.040000</value>
593 <value letter_id="V">0.000000</value>
594 <value letter_id="W">0.000000</value>
595 <value letter_id="Y">0.000000</value>
596 </alphabet_array>
597 <alphabet_array>
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599 <value letter_id="C">0.320000</value>
600 <value letter_id="D">0.000000</value>
601 <value letter_id="E">0.000000</value>
602 <value letter_id="F">0.000000</value>
603 <value letter_id="G">0.360000</value>
604 <value letter_id="H">0.000000</value>
605 <value letter_id="I">0.000000</value>
606 <value letter_id="K">0.000000</value>
607 <value letter_id="L">0.000000</value>
608 <value letter_id="M">0.000000</value>
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610 <value letter_id="P">0.000000</value>
611 <value letter_id="Q">0.000000</value>
612 <value letter_id="R">0.000000</value>
613 <value letter_id="S">0.000000</value>
614 <value letter_id="T">0.160000</value>
615 <value letter_id="V">0.000000</value>
616 <value letter_id="W">0.000000</value>
617 <value letter_id="Y">0.000000</value>
618 </alphabet_array>
619 <alphabet_array>
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621 <value letter_id="C">0.000000</value>
622 <value letter_id="D">0.000000</value>
623 <value letter_id="E">0.000000</value>
624 <value letter_id="F">0.000000</value>
625 <value letter_id="G">0.640000</value>
626 <value letter_id="H">0.000000</value>
627 <value letter_id="I">0.000000</value>
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629 <value letter_id="L">0.000000</value>
630 <value letter_id="M">0.000000</value>
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632 <value letter_id="P">0.000000</value>
633 <value letter_id="Q">0.000000</value>
634 <value letter_id="R">0.000000</value>
635 <value letter_id="S">0.000000</value>
636 <value letter_id="T">0.040000</value>
637 <value letter_id="V">0.000000</value>
638 <value letter_id="W">0.000000</value>
639 <value letter_id="Y">0.000000</value>
640 </alphabet_array>
641 <alphabet_array>
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643 <value letter_id="C">0.000000</value>
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650 <value letter_id="K">0.000000</value>
651 <value letter_id="L">0.000000</value>
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661 <value letter_id="Y">0.000000</value>
662 </alphabet_array>
663 <alphabet_array>
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665 <value letter_id="C">0.040000</value>
666 <value letter_id="D">0.000000</value>
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668 <value letter_id="F">0.000000</value>
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671 <value letter_id="I">0.000000</value>
672 <value letter_id="K">0.000000</value>
673 <value letter_id="L">0.000000</value>
674 <value letter_id="M">0.000000</value>
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677 <value letter_id="Q">0.000000</value>
678 <value letter_id="R">0.000000</value>
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680 <value letter_id="T">0.000000</value>
681 <value letter_id="V">0.000000</value>
682 <value letter_id="W">0.000000</value>
683 <value letter_id="Y">0.000000</value>
684 </alphabet_array>
685 <alphabet_array>
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687 <value letter_id="C">0.000000</value>
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690 <value letter_id="F">0.000000</value>
691 <value letter_id="G">0.000000</value>
692 <value letter_id="H">0.000000</value>
693 <value letter_id="I">0.000000</value>
694 <value letter_id="K">0.000000</value>
695 <value letter_id="L">0.000000</value>
696 <value letter_id="M">0.000000</value>
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699 <value letter_id="Q">0.000000</value>
700 <value letter_id="R">0.000000</value>
701 <value letter_id="S">0.000000</value>
702 <value letter_id="T">1.000000</value>
703 <value letter_id="V">0.000000</value>
704 <value letter_id="W">0.000000</value>
705 <value letter_id="Y">0.000000</value>
706 </alphabet_array>
707 <alphabet_array>
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709 <value letter_id="C">0.000000</value>
710 <value letter_id="D">0.000000</value>
711 <value letter_id="E">0.000000</value>
712 <value letter_id="F">0.000000</value>
713 <value letter_id="G">0.000000</value>
714 <value letter_id="H">0.000000</value>
715 <value letter_id="I">0.000000</value>
716 <value letter_id="K">0.000000</value>
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718 <value letter_id="M">0.000000</value>
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721 <value letter_id="Q">0.000000</value>
722 <value letter_id="R">0.000000</value>
723 <value letter_id="S">0.000000</value>
724 <value letter_id="T">0.000000</value>
725 <value letter_id="V">0.000000</value>
726 <value letter_id="W">0.000000</value>
727 <value letter_id="Y">0.000000</value>
728 </alphabet_array>
729 <alphabet_array>
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731 <value letter_id="C">0.000000</value>
732 <value letter_id="D">0.000000</value>
733 <value letter_id="E">0.000000</value>
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735 <value letter_id="G">0.000000</value>
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737 <value letter_id="I">0.000000</value>
738 <value letter_id="K">0.000000</value>
739 <value letter_id="L">0.000000</value>
740 <value letter_id="M">0.000000</value>
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743 <value letter_id="Q">0.000000</value>
744 <value letter_id="R">0.000000</value>
745 <value letter_id="S">0.000000</value>
746 <value letter_id="T">0.240000</value>
747 <value letter_id="V">0.000000</value>
748 <value letter_id="W">0.000000</value>
749 <value letter_id="Y">0.000000</value>
750 </alphabet_array>
751 <alphabet_array>
752 <value letter_id="A">0.960000</value>
753 <value letter_id="C">0.040000</value>
754 <value letter_id="D">0.000000</value>
755 <value letter_id="E">0.000000</value>
756 <value letter_id="F">0.000000</value>
757 <value letter_id="G">0.000000</value>
758 <value letter_id="H">0.000000</value>
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760 <value letter_id="K">0.000000</value>
761 <value letter_id="L">0.000000</value>
762 <value letter_id="M">0.000000</value>
763 <value letter_id="N">0.000000</value>
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765 <value letter_id="Q">0.000000</value>
766 <value letter_id="R">0.000000</value>
767 <value letter_id="S">0.000000</value>
768 <value letter_id="T">0.000000</value>
769 <value letter_id="V">0.000000</value>
770 <value letter_id="W">0.000000</value>
771 <value letter_id="Y">0.000000</value>
772 </alphabet_array>
773 <alphabet_array>
774 <value letter_id="A">0.840000</value>
775 <value letter_id="C">0.000000</value>
776 <value letter_id="D">0.000000</value>
777 <value letter_id="E">0.000000</value>
778 <value letter_id="F">0.000000</value>
779 <value letter_id="G">0.120000</value>
780 <value letter_id="H">0.000000</value>
781 <value letter_id="I">0.000000</value>
782 <value letter_id="K">0.000000</value>
783 <value letter_id="L">0.000000</value>
784 <value letter_id="M">0.000000</value>
785 <value letter_id="N">0.000000</value>
786 <value letter_id="P">0.000000</value>
787 <value letter_id="Q">0.000000</value>
788 <value letter_id="R">0.000000</value>
789 <value letter_id="S">0.000000</value>
790 <value letter_id="T">0.040000</value>
791 <value letter_id="V">0.000000</value>
792 <value letter_id="W">0.000000</value>
793 <value letter_id="Y">0.000000</value>
794 </alphabet_array>
795 </alphabet_matrix>
796 </probabilities>
797 <regular_expression>
798 [GA][GA][GC][GA]TATA[AT]AA
799 </regular_expression>
800 <contributing_sites>
801 <contributing_site sequence_id="sequence_24" position="12" strand="none" pvalue="1.06e-06" >
802 <left_flank>AAGGCCAGGA</left_flank>
803 <site>
804 <letter_ref letter_id="G"/>
805 <letter_ref letter_id="G"/>
806 <letter_ref letter_id="G"/>
807 <letter_ref letter_id="G"/>
808 <letter_ref letter_id="T"/>
809 <letter_ref letter_id="A"/>
810 <letter_ref letter_id="T"/>
811 <letter_ref letter_id="A"/>
812 <letter_ref letter_id="A"/>
813 <letter_ref letter_id="A"/>
814 <letter_ref letter_id="A"/>
815 </site>
816 <right_flank>GCCTGAGAGC</right_flank>
817 </contributing_site>
818 <contributing_site sequence_id="sequence_25" position="36" strand="none" pvalue="3.41e-06" >
819 <left_flank>ACAGGCCCTG</left_flank>
820 <site>
821 <letter_ref letter_id="G"/>
822 <letter_ref letter_id="G"/>
823 <letter_ref letter_id="C"/>
824 <letter_ref letter_id="A"/>
825 <letter_ref letter_id="T"/>
826 <letter_ref letter_id="A"/>
827 <letter_ref letter_id="T"/>
828 <letter_ref letter_id="A"/>
829 <letter_ref letter_id="A"/>
830 <letter_ref letter_id="A"/>
831 <letter_ref letter_id="A"/>
832 </site>
833 <right_flank>GCC</right_flank>
834 </contributing_site>
835 <contributing_site sequence_id="sequence_19" position="9" strand="none" pvalue="3.41e-06" >
836 <left_flank>CAGGCCCTG</left_flank>
837 <site>
838 <letter_ref letter_id="G"/>
839 <letter_ref letter_id="G"/>
840 <letter_ref letter_id="C"/>
841 <letter_ref letter_id="A"/>
842 <letter_ref letter_id="T"/>
843 <letter_ref letter_id="A"/>
844 <letter_ref letter_id="T"/>
845 <letter_ref letter_id="A"/>
846 <letter_ref letter_id="A"/>
847 <letter_ref letter_id="A"/>
848 <letter_ref letter_id="A"/>
849 </site>
850 <right_flank>GCCCCAGCAG</right_flank>
851 </contributing_site>
852 <contributing_site sequence_id="sequence_9" position="13" strand="none" pvalue="3.41e-06" >
853 <left_flank>GATTCACTGA</left_flank>
854 <site>
855 <letter_ref letter_id="G"/>
856 <letter_ref letter_id="G"/>
857 <letter_ref letter_id="C"/>
858 <letter_ref letter_id="A"/>
859 <letter_ref letter_id="T"/>
860 <letter_ref letter_id="A"/>
861 <letter_ref letter_id="T"/>
862 <letter_ref letter_id="A"/>
863 <letter_ref letter_id="A"/>
864 <letter_ref letter_id="A"/>
865 <letter_ref letter_id="A"/>
866 </site>
867 <right_flank>GGCCCTCTGC</right_flank>
868 </contributing_site>
869 <contributing_site sequence_id="sequence_21" position="7" strand="none" pvalue="4.00e-06" >
870 <left_flank>CCAAGGA</left_flank>
871 <site>
872 <letter_ref letter_id="G"/>
873 <letter_ref letter_id="G"/>
874 <letter_ref letter_id="A"/>
875 <letter_ref letter_id="G"/>
876 <letter_ref letter_id="T"/>
877 <letter_ref letter_id="A"/>
878 <letter_ref letter_id="T"/>
879 <letter_ref letter_id="A"/>
880 <letter_ref letter_id="A"/>
881 <letter_ref letter_id="A"/>
882 <letter_ref letter_id="A"/>
883 </site>
884 <right_flank>GCCCCACAAA</right_flank>
885 </contributing_site>
886 <contributing_site sequence_id="sequence_13" position="13" strand="none" pvalue="5.01e-06" >
887 <left_flank>CCACCAGCTT</left_flank>
888 <site>
889 <letter_ref letter_id="G"/>
890 <letter_ref letter_id="A"/>
891 <letter_ref letter_id="G"/>
892 <letter_ref letter_id="G"/>
893 <letter_ref letter_id="T"/>
894 <letter_ref letter_id="A"/>
895 <letter_ref letter_id="T"/>
896 <letter_ref letter_id="A"/>
897 <letter_ref letter_id="A"/>
898 <letter_ref letter_id="A"/>
899 <letter_ref letter_id="A"/>
900 </site>
901 <right_flank>AGCCCTGTAC</right_flank>
902 </contributing_site>
903 <contributing_site sequence_id="sequence_23" position="15" strand="none" pvalue="6.06e-06" >
904 <left_flank>ATACCCAGGG</left_flank>
905 <site>
906 <letter_ref letter_id="A"/>
907 <letter_ref letter_id="G"/>
908 <letter_ref letter_id="G"/>
909 <letter_ref letter_id="G"/>
910 <letter_ref letter_id="T"/>
911 <letter_ref letter_id="A"/>
912 <letter_ref letter_id="T"/>
913 <letter_ref letter_id="A"/>
914 <letter_ref letter_id="A"/>
915 <letter_ref letter_id="A"/>
916 <letter_ref letter_id="A"/>
917 </site>
918 <right_flank>CCTCAGCAGC</right_flank>
919 </contributing_site>
920 <contributing_site sequence_id="sequence_15" position="21" strand="none" pvalue="8.67e-06" >
921 <left_flank>AATCACTGAG</left_flank>
922 <site>
923 <letter_ref letter_id="G"/>
924 <letter_ref letter_id="A"/>
925 <letter_ref letter_id="T"/>
926 <letter_ref letter_id="G"/>
927 <letter_ref letter_id="T"/>
928 <letter_ref letter_id="A"/>
929 <letter_ref letter_id="T"/>
930 <letter_ref letter_id="A"/>
931 <letter_ref letter_id="A"/>
932 <letter_ref letter_id="A"/>
933 <letter_ref letter_id="A"/>
934 </site>
935 <right_flank>GTCCCAGGGA</right_flank>
936 </contributing_site>
937 <contributing_site sequence_id="sequence_12" position="18" strand="none" pvalue="8.67e-06" >
938 <left_flank>CACCAGAGCT</left_flank>
939 <site>
940 <letter_ref letter_id="G"/>
941 <letter_ref letter_id="G"/>
942 <letter_ref letter_id="G"/>
943 <letter_ref letter_id="A"/>
944 <letter_ref letter_id="T"/>
945 <letter_ref letter_id="A"/>
946 <letter_ref letter_id="T"/>
947 <letter_ref letter_id="A"/>
948 <letter_ref letter_id="T"/>
949 <letter_ref letter_id="A"/>
950 <letter_ref letter_id="A"/>
951 </site>
952 <right_flank>AGAAGGTTCT</right_flank>
953 </contributing_site>
954 <contributing_site sequence_id="sequence_11" position="16" strand="none" pvalue="8.67e-06" >
955 <left_flank>CACTATTGAA</left_flank>
956 <site>
957 <letter_ref letter_id="G"/>
958 <letter_ref letter_id="A"/>
959 <letter_ref letter_id="T"/>
960 <letter_ref letter_id="G"/>
961 <letter_ref letter_id="T"/>
962 <letter_ref letter_id="A"/>
963 <letter_ref letter_id="T"/>
964 <letter_ref letter_id="A"/>
965 <letter_ref letter_id="A"/>
966 <letter_ref letter_id="A"/>
967 <letter_ref letter_id="A"/>
968 </site>
969 <right_flank>TTTCATTTGC</right_flank>
970 </contributing_site>
971 <contributing_site sequence_id="sequence_22" position="2" strand="none" pvalue="1.21e-05" >
972 <left_flank>GA</left_flank>
973 <site>
974 <letter_ref letter_id="G"/>
975 <letter_ref letter_id="A"/>
976 <letter_ref letter_id="C"/>
977 <letter_ref letter_id="A"/>
978 <letter_ref letter_id="T"/>
979 <letter_ref letter_id="A"/>
980 <letter_ref letter_id="T"/>
981 <letter_ref letter_id="A"/>
982 <letter_ref letter_id="A"/>
983 <letter_ref letter_id="A"/>
984 <letter_ref letter_id="A"/>
985 </site>
986 <right_flank>GCCAACATCC</right_flank>
987 </contributing_site>
988 <contributing_site sequence_id="sequence_28" position="32" strand="none" pvalue="1.59e-05" >
989 <left_flank>CCGGCGGGGC</left_flank>
990 <site>
991 <letter_ref letter_id="G"/>
992 <letter_ref letter_id="G"/>
993 <letter_ref letter_id="G"/>
994 <letter_ref letter_id="G"/>
995 <letter_ref letter_id="T"/>
996 <letter_ref letter_id="A"/>
997 <letter_ref letter_id="T"/>
998 <letter_ref letter_id="A"/>
999 <letter_ref letter_id="A"/>
1000 <letter_ref letter_id="A"/>
1001 <letter_ref letter_id="G"/>
1002 </site>
1003 <right_flank>GGGGCGG</right_flank>
1004 </contributing_site>
1005 <contributing_site sequence_id="sequence_20" position="4" strand="none" pvalue="1.59e-05" >
1006 <left_flank>CAGA</left_flank>
1007 <site>
1008 <letter_ref letter_id="G"/>
1009 <letter_ref letter_id="G"/>
1010 <letter_ref letter_id="G"/>
1011 <letter_ref letter_id="G"/>
1012 <letter_ref letter_id="T"/>
1013 <letter_ref letter_id="A"/>
1014 <letter_ref letter_id="T"/>
1015 <letter_ref letter_id="A"/>
1016 <letter_ref letter_id="A"/>
1017 <letter_ref letter_id="A"/>
1018 <letter_ref letter_id="G"/>
1019 </site>
1020 <right_flank>GTTCCGACCA</right_flank>
1021 </contributing_site>
1022 <contributing_site sequence_id="sequence_6" position="15" strand="none" pvalue="1.68e-05" >
1023 <left_flank>CCCACTACTT</left_flank>
1024 <site>
1025 <letter_ref letter_id="A"/>
1026 <letter_ref letter_id="G"/>
1027 <letter_ref letter_id="A"/>
1028 <letter_ref letter_id="G"/>
1029 <letter_ref letter_id="T"/>
1030 <letter_ref letter_id="A"/>
1031 <letter_ref letter_id="T"/>
1032 <letter_ref letter_id="A"/>
1033 <letter_ref letter_id="A"/>
1034 <letter_ref letter_id="A"/>
1035 <letter_ref letter_id="A"/>
1036 </site>
1037 <right_flank>TCATTCTGAG</right_flank>
1038 </contributing_site>
1039 <contributing_site sequence_id="sequence_14" position="19" strand="none" pvalue="2.03e-05" >
1040 <left_flank>CACCAGCAAG</left_flank>
1041 <site>
1042 <letter_ref letter_id="G"/>
1043 <letter_ref letter_id="A"/>
1044 <letter_ref letter_id="T"/>
1045 <letter_ref letter_id="A"/>
1046 <letter_ref letter_id="T"/>
1047 <letter_ref letter_id="A"/>
1048 <letter_ref letter_id="T"/>
1049 <letter_ref letter_id="A"/>
1050 <letter_ref letter_id="A"/>
1051 <letter_ref letter_id="A"/>
1052 <letter_ref letter_id="A"/>
1053 </site>
1054 <right_flank>GCTCAGGAGT</right_flank>
1055 </contributing_site>
1056 <contributing_site sequence_id="sequence_4" position="12" strand="none" pvalue="3.06e-05" >
1057 <left_flank>CAGGTCTAAG</left_flank>
1058 <site>
1059 <letter_ref letter_id="A"/>
1060 <letter_ref letter_id="G"/>
1061 <letter_ref letter_id="C"/>
1062 <letter_ref letter_id="A"/>
1063 <letter_ref letter_id="T"/>
1064 <letter_ref letter_id="A"/>
1065 <letter_ref letter_id="T"/>
1066 <letter_ref letter_id="A"/>
1067 <letter_ref letter_id="T"/>
1068 <letter_ref letter_id="A"/>
1069 <letter_ref letter_id="A"/>
1070 </site>
1071 <right_flank>CTTGGAGTCC</right_flank>
1072 </contributing_site>
1073 <contributing_site sequence_id="sequence_0" position="39" strand="none" pvalue="3.06e-05" >
1074 <left_flank>CCTCGGGACG</left_flank>
1075 <site>
1076 <letter_ref letter_id="T"/>
1077 <letter_ref letter_id="G"/>
1078 <letter_ref letter_id="G"/>
1079 <letter_ref letter_id="G"/>
1080 <letter_ref letter_id="T"/>
1081 <letter_ref letter_id="A"/>
1082 <letter_ref letter_id="T"/>
1083 <letter_ref letter_id="A"/>
1084 <letter_ref letter_id="T"/>
1085 <letter_ref letter_id="A"/>
1086 <letter_ref letter_id="A"/>
1087 </site>
1088 <right_flank></right_flank>
1089 </contributing_site>
1090 <contributing_site sequence_id="sequence_18" position="37" strand="none" pvalue="3.82e-05" >
1091 <left_flank>CGTGGTCGCG</left_flank>
1092 <site>
1093 <letter_ref letter_id="G"/>
1094 <letter_ref letter_id="G"/>
1095 <letter_ref letter_id="G"/>
1096 <letter_ref letter_id="G"/>
1097 <letter_ref letter_id="T"/>
1098 <letter_ref letter_id="A"/>
1099 <letter_ref letter_id="T"/>
1100 <letter_ref letter_id="A"/>
1101 <letter_ref letter_id="A"/>
1102 <letter_ref letter_id="C"/>
1103 <letter_ref letter_id="A"/>
1104 </site>
1105 <right_flank>GC</right_flank>
1106 </contributing_site>
1107 <contributing_site sequence_id="sequence_5" position="0" strand="none" pvalue="3.82e-05" >
1108 <left_flank></left_flank>
1109 <site>
1110 <letter_ref letter_id="A"/>
1111 <letter_ref letter_id="A"/>
1112 <letter_ref letter_id="C"/>
1113 <letter_ref letter_id="G"/>
1114 <letter_ref letter_id="T"/>
1115 <letter_ref letter_id="A"/>
1116 <letter_ref letter_id="T"/>
1117 <letter_ref letter_id="A"/>
1118 <letter_ref letter_id="T"/>
1119 <letter_ref letter_id="A"/>
1120 <letter_ref letter_id="A"/>
1121 </site>
1122 <right_flank>ATGGTCCTGT</right_flank>
1123 </contributing_site>
1124 <contributing_site sequence_id="sequence_29" position="30" strand="none" pvalue="4.02e-05" >
1125 <left_flank>GCTGCCGGTG</left_flank>
1126 <site>
1127 <letter_ref letter_id="A"/>
1128 <letter_ref letter_id="G"/>
1129 <letter_ref letter_id="C"/>
1130 <letter_ref letter_id="G"/>
1131 <letter_ref letter_id="T"/>
1132 <letter_ref letter_id="A"/>
1133 <letter_ref letter_id="T"/>
1134 <letter_ref letter_id="A"/>
1135 <letter_ref letter_id="A"/>
1136 <letter_ref letter_id="A"/>
1137 <letter_ref letter_id="G"/>
1138 </site>
1139 <right_flank>GCCCTGGCG</right_flank>
1140 </contributing_site>
1141 <contributing_site sequence_id="sequence_1" position="27" strand="none" pvalue="5.52e-05" >
1142 <left_flank>AGTCACAAGT</left_flank>
1143 <site>
1144 <letter_ref letter_id="G"/>
1145 <letter_ref letter_id="A"/>
1146 <letter_ref letter_id="G"/>
1147 <letter_ref letter_id="T"/>
1148 <letter_ref letter_id="T"/>
1149 <letter_ref letter_id="A"/>
1150 <letter_ref letter_id="T"/>
1151 <letter_ref letter_id="A"/>
1152 <letter_ref letter_id="A"/>
1153 <letter_ref letter_id="A"/>
1154 <letter_ref letter_id="A"/>
1155 </site>
1156 <right_flank>GGGTCGCACG</right_flank>
1157 </contributing_site>
1158 <contributing_site sequence_id="sequence_3" position="14" strand="none" pvalue="5.94e-05" >
1159 <left_flank>CCCAGGTTTC</left_flank>
1160 <site>
1161 <letter_ref letter_id="T"/>
1162 <letter_ref letter_id="G"/>
1163 <letter_ref letter_id="A"/>
1164 <letter_ref letter_id="G"/>
1165 <letter_ref letter_id="T"/>
1166 <letter_ref letter_id="A"/>
1167 <letter_ref letter_id="T"/>
1168 <letter_ref letter_id="A"/>
1169 <letter_ref letter_id="T"/>
1170 <letter_ref letter_id="A"/>
1171 <letter_ref letter_id="A"/>
1172 </site>
1173 <right_flank>TCGCCGCACC</right_flank>
1174 </contributing_site>
1175 <contributing_site sequence_id="sequence_16" position="22" strand="none" pvalue="6.78e-05" >
1176 <left_flank>AGTTTCAGTT</left_flank>
1177 <site>
1178 <letter_ref letter_id="G"/>
1179 <letter_ref letter_id="G"/>
1180 <letter_ref letter_id="C"/>
1181 <letter_ref letter_id="A"/>
1182 <letter_ref letter_id="T"/>
1183 <letter_ref letter_id="C"/>
1184 <letter_ref letter_id="T"/>
1185 <letter_ref letter_id="A"/>
1186 <letter_ref letter_id="A"/>
1187 <letter_ref letter_id="A"/>
1188 <letter_ref letter_id="A"/>
1189 </site>
1190 <right_flank>attatataac</right_flank>
1191 </contributing_site>
1192 <contributing_site sequence_id="sequence_7" position="2" strand="none" pvalue="2.08e-04" >
1193 <left_flank>TC</left_flank>
1194 <site>
1195 <letter_ref letter_id="A"/>
1196 <letter_ref letter_id="G"/>
1197 <letter_ref letter_id="A"/>
1198 <letter_ref letter_id="G"/>
1199 <letter_ref letter_id="T"/>
1200 <letter_ref letter_id="A"/>
1201 <letter_ref letter_id="T"/>
1202 <letter_ref letter_id="A"/>
1203 <letter_ref letter_id="T"/>
1204 <letter_ref letter_id="A"/>
1205 <letter_ref letter_id="T"/>
1206 </site>
1207 <right_flank>AAATGTTCCT</right_flank>
1208 </contributing_site>
1209 <contributing_site sequence_id="sequence_8" position="13" strand="none" pvalue="4.05e-04" >
1210 <left_flank>TATAACTCAG</left_flank>
1211 <site>
1212 <letter_ref letter_id="G"/>
1213 <letter_ref letter_id="T"/>
1214 <letter_ref letter_id="T"/>
1215 <letter_ref letter_id="G"/>
1216 <letter_ref letter_id="G"/>
1217 <letter_ref letter_id="A"/>
1218 <letter_ref letter_id="T"/>
1219 <letter_ref letter_id="A"/>
1220 <letter_ref letter_id="A"/>
1221 <letter_ref letter_id="A"/>
1222 <letter_ref letter_id="A"/>
1223 </site>
1224 <right_flank>TAATTTGTAC</right_flank>
1225 </contributing_site>
1226 </contributing_sites>
1227 </motif>
1228 </motifs>
1229 <scanned_sites_summary p_thresh="0.0001">
1230 <scanned_sites sequence_id="sequence_0" pvalue="1.22e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="39" pvalue="3.06e-05"/>
1231 </scanned_sites>
1232 <scanned_sites sequence_id="sequence_1" pvalue="2.21e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="27" pvalue="5.52e-05"/>
1233 </scanned_sites>
1234 <scanned_sites sequence_id="sequence_2" pvalue="7.29e-01" num_sites="0"></scanned_sites>
1235 <scanned_sites sequence_id="sequence_3" pvalue="2.37e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="14" pvalue="5.94e-05"/>
1236 </scanned_sites>
1237 <scanned_sites sequence_id="sequence_4" pvalue="1.22e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="12" pvalue="3.06e-05"/>
1238 </scanned_sites>
1239 <scanned_sites sequence_id="sequence_5" pvalue="1.53e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="0" pvalue="3.82e-05"/>
1240 </scanned_sites>
1241 <scanned_sites sequence_id="sequence_6" pvalue="6.70e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="15" pvalue="1.68e-05"/>
1242 </scanned_sites>
1243 <scanned_sites sequence_id="sequence_7" pvalue="1.81e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="4" pvalue="4.54e-05"/>
1244 </scanned_sites>
1245 <scanned_sites sequence_id="sequence_8" pvalue="1.61e-02" num_sites="0"></scanned_sites>
1246 <scanned_sites sequence_id="sequence_9" pvalue="1.36e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="13" pvalue="3.41e-06"/>
1247 </scanned_sites>
1248 <scanned_sites sequence_id="sequence_10" pvalue="1.99e-01" num_sites="0"></scanned_sites>
1249 <scanned_sites sequence_id="sequence_11" pvalue="3.47e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="16" pvalue="8.67e-06"/>
1250 </scanned_sites>
1251 <scanned_sites sequence_id="sequence_12" pvalue="3.47e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="18" pvalue="8.67e-06"/>
1252 </scanned_sites>
1253 <scanned_sites sequence_id="sequence_13" pvalue="2.01e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="13" pvalue="5.01e-06"/>
1254 </scanned_sites>
1255 <scanned_sites sequence_id="sequence_14" pvalue="8.11e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="19" pvalue="2.03e-05"/>
1256 </scanned_sites>
1257 <scanned_sites sequence_id="sequence_15" pvalue="3.47e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="21" pvalue="8.67e-06"/>
1258 </scanned_sites>
1259 <scanned_sites sequence_id="sequence_16" pvalue="2.71e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="22" pvalue="6.78e-05"/>
1260 </scanned_sites>
1261 <scanned_sites sequence_id="sequence_17" pvalue="8.23e-02" num_sites="0"></scanned_sites>
1262 <scanned_sites sequence_id="sequence_18" pvalue="1.53e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="37" pvalue="3.82e-05"/>
1263 </scanned_sites>
1264 <scanned_sites sequence_id="sequence_19" pvalue="1.36e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="9" pvalue="3.41e-06"/>
1265 </scanned_sites>
1266 <scanned_sites sequence_id="sequence_20" pvalue="6.37e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="4" pvalue="1.59e-05"/>
1267 </scanned_sites>
1268 <scanned_sites sequence_id="sequence_21" pvalue="1.60e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="7" pvalue="4.00e-06"/>
1269 </scanned_sites>
1270 <scanned_sites sequence_id="sequence_22" pvalue="4.83e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="2" pvalue="1.21e-05"/>
1271 </scanned_sites>
1272 <scanned_sites sequence_id="sequence_23" pvalue="2.43e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="15" pvalue="6.06e-06"/>
1273 </scanned_sites>
1274 <scanned_sites sequence_id="sequence_24" pvalue="4.26e-05" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="12" pvalue="1.06e-06"/>
1275 </scanned_sites>
1276 <scanned_sites sequence_id="sequence_25" pvalue="1.36e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="36" pvalue="3.41e-06"/>
1277 </scanned_sites>
1278 <scanned_sites sequence_id="sequence_26" pvalue="4.30e-02" num_sites="0"></scanned_sites>
1279 <scanned_sites sequence_id="sequence_27" pvalue="4.30e-02" num_sites="0"></scanned_sites>
1280 <scanned_sites sequence_id="sequence_28" pvalue="6.37e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="32" pvalue="1.59e-05"/>
1281 </scanned_sites>
1282 <scanned_sites sequence_id="sequence_29" pvalue="1.61e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="30" pvalue="4.02e-05"/>
1283 </scanned_sites>
1284 </scanned_sites_summary>
1285 </MEME>