Mercurial > repos > iuc > meme_fimo
comparison test-data/fimo_output_test3.xml @ 19:01f5d04846c4 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 93fe7345e2b6a97000975d978bf06513b3a442d9
author | iuc |
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date | Thu, 29 Aug 2024 10:19:40 +0000 |
parents | c5209f38700d |
children |
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18:c5209f38700d | 19:01f5d04846c4 |
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1 <sequence-data num-sequences="1" num-residues="16569" /> | |
2 <alphabet name="DNA" like="dna"> | |
3 <letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/> | |
4 <letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/> | |
5 <letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/> | |
6 <letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/> | |
7 <letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/> | |
8 <letter id="V" symbol="V" equals="ACG" name="Not T"/> | |
9 <letter id="H" symbol="H" equals="ACT" name="Not G"/> | |
10 <letter id="D" symbol="D" equals="AGT" name="Not C"/> | |
11 <letter id="B" symbol="B" equals="CGT" name="Not A"/> | |
12 <letter id="M" symbol="M" equals="AC" name="Amino"/> | |
13 <letter id="R" symbol="R" equals="AG" name="Purine"/> | |
14 <letter id="W" symbol="W" equals="AT" name="Weak"/> | |
15 <letter id="S" symbol="S" equals="CG" name="Strong"/> | |
16 <letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/> | |
17 <letter id="K" symbol="K" equals="GT" name="Keto"/> | |
18 </alphabet> | |
19 <motif name="ACTAAYH" alt="DREME-1" width="7" best-possible-match="ACTAACA"/> | |
20 <motif name="YTAACA" alt="DREME-2" width="6" best-possible-match="TTAACA"/> | |
21 <motif name="TCTGT" alt="DREME-3" width="5" best-possible-match="TCTGT"/> | |
22 <motif name="SCCAGG" alt="DREME-4" width="6" best-possible-match="CCCAGG"/> | |
23 <motif name="CCAGCAY" alt="DREME-5" width="7" best-possible-match="CCAGCAC"/> | |
24 <motif name="GMATGT" alt="DREME-6" width="6" best-possible-match="GAATGT"/> | |
25 <background source="--uniform--"> | |
26 <value letter="A">0.250</value> | |
27 <value letter="C">0.250</value> | |
28 <value letter="G">0.250</value> | |
29 <value letter="T">0.250</value> | |
30 </background> | |
31 <cisml-file>cisml.xml</cisml-file> | |
32 </fimo> |