Mercurial > repos > iuc > meme_meme

comparison meme.xml @ 7:487ce3fa1822 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit ef11594cf3ca79e444ab4e30d83de5951a636faf
author iuc
date Sun, 10 Jul 2016 09:02:25 -0400
parents 34c794383f81
children 794b2859c286
comparison
equal deleted inserted replaced
6:62d1fae3b7d3 7:487ce3fa1822
1 <tool id="meme_meme" name="MEME" version="4.11.0.1"> 1 <tool id="meme_meme" name="MEME" version="4.11.1.0">
2 <description>- Multiple Em for Motif Elicitation</description> 2 <description>- Multiple Em for Motif Elicitation</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="6.9.3">imagemagick</requirement> 4 <requirement type="package" version="1.3.20">graphicsmagick</requirement>
5 <requirement type="package" version="4.11.0">meme</requirement> 5 <requirement type="package" version="4.11.1">meme</requirement>
6 </requirements> 6 </requirements>
7 <stdio>
8 <!-- Anything other than zero is an error -->
9 <exit_code range="1:" />
10 <!-- In case the return code has not been set propery check stderr too -->
11 <regex match="Error:" />
12 <regex match="Exception:" />
13 </stdio>
7 <command> 14 <command>
8 <![CDATA[ 15 <![CDATA[
9 meme "$input1" 16 meme "$input1"
10 -o "${html_outfile.files_path}" 17 -o "${html_outfile.files_path}"
11 -nostatus 18 -nostatus
68 -x_branch 75 -x_branch
69 -bfactor "${options_type.branching_type.bfactor}" 76 -bfactor "${options_type.branching_type.bfactor}"
70 -heapsize "${options_type.branching_type.heapsize}" 77 -heapsize "${options_type.branching_type.heapsize}"
71 #end if 78 #end if
72 #end if 79 #end if
73 2>&1 || echo "Error running MEME."
74 && mv ${html_outfile.files_path}/meme.html ${html_outfile} 80 && mv ${html_outfile.files_path}/meme.html ${html_outfile}
75 && mv ${html_outfile.files_path}/meme.txt ${txt_outfile} 81 && mv ${html_outfile.files_path}/meme.txt ${txt_outfile}
76 && mv ${html_outfile.files_path}/meme.xml ${xml_outfile} 82 && mv ${html_outfile.files_path}/meme.xml ${xml_outfile}
77 ]]> 83 ]]>
78 </command> 84 </command>