Mercurial > repos > iuc > meme_meme
comparison meme.xml @ 7:487ce3fa1822 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit ef11594cf3ca79e444ab4e30d83de5951a636faf
author | iuc |
---|---|
date | Sun, 10 Jul 2016 09:02:25 -0400 |
parents | 34c794383f81 |
children | 794b2859c286 |
comparison
equal
deleted
inserted
replaced
6:62d1fae3b7d3 | 7:487ce3fa1822 |
---|---|
1 <tool id="meme_meme" name="MEME" version="4.11.0.1"> | 1 <tool id="meme_meme" name="MEME" version="4.11.1.0"> |
2 <description>- Multiple Em for Motif Elicitation</description> | 2 <description>- Multiple Em for Motif Elicitation</description> |
3 <requirements> | 3 <requirements> |
4 <requirement type="package" version="6.9.3">imagemagick</requirement> | 4 <requirement type="package" version="1.3.20">graphicsmagick</requirement> |
5 <requirement type="package" version="4.11.0">meme</requirement> | 5 <requirement type="package" version="4.11.1">meme</requirement> |
6 </requirements> | 6 </requirements> |
7 <stdio> | |
8 <!-- Anything other than zero is an error --> | |
9 <exit_code range="1:" /> | |
10 <!-- In case the return code has not been set propery check stderr too --> | |
11 <regex match="Error:" /> | |
12 <regex match="Exception:" /> | |
13 </stdio> | |
7 <command> | 14 <command> |
8 <![CDATA[ | 15 <![CDATA[ |
9 meme "$input1" | 16 meme "$input1" |
10 -o "${html_outfile.files_path}" | 17 -o "${html_outfile.files_path}" |
11 -nostatus | 18 -nostatus |
68 -x_branch | 75 -x_branch |
69 -bfactor "${options_type.branching_type.bfactor}" | 76 -bfactor "${options_type.branching_type.bfactor}" |
70 -heapsize "${options_type.branching_type.heapsize}" | 77 -heapsize "${options_type.branching_type.heapsize}" |
71 #end if | 78 #end if |
72 #end if | 79 #end if |
73 2>&1 || echo "Error running MEME." | |
74 && mv ${html_outfile.files_path}/meme.html ${html_outfile} | 80 && mv ${html_outfile.files_path}/meme.html ${html_outfile} |
75 && mv ${html_outfile.files_path}/meme.txt ${txt_outfile} | 81 && mv ${html_outfile.files_path}/meme.txt ${txt_outfile} |
76 && mv ${html_outfile.files_path}/meme.xml ${xml_outfile} | 82 && mv ${html_outfile.files_path}/meme.xml ${xml_outfile} |
77 ]]> | 83 ]]> |
78 </command> | 84 </command> |