comparison meme.xml @ 13:57e5d9382f36 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b

12:5585f04eb317

<tool id="meme_meme" name="MEME" version="@WRAPPER_VERSION@.0">
    <description>- Multiple Em for Motif Elicitation</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <command detect_errors="exit_code"><![CDATA[

    <tests>
        <test>
            <param name="input1" value="meme_input_1.fasta" ftype="fasta" dbkey="hg19"/>
            <param name="options_type_selector" value="basic"/>
            <param name="non_commercial_use" value="True"/>
            <output name="html_outfile" file="meme_output_html_1.html" compare="contains"/>
            <output name="txt_outfile" file="meme_output_txt_1.txt" lines_diff="12"/>
            <output name="xml_outfile" file="meme_output_xml_1.xml" lines_diff="8"/>
        </test>
        <test>
            <param name="input1" value="meme_input_1.fasta" ftype="fasta" dbkey="hg19"/>
            <param name="options_type_selector" value="advanced"/>
            <param name="plib" value="prior30.plib" ftype="txt"/>
            <param name="non_commercial_use" value="True"/>
            <output name="html_outfile" file="meme_output_html_2.html" compare="contains"/>
            <output name="txt_outfile" file="meme_output_txt_2.txt" lines_diff="12"/>
            <output name="xml_outfile" file="meme_output_xml_2.xml" lines_diff="8"/>
        </test>
    </tests>
    <help>

.. class:: warningmark

    booktitle = {Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology},
    pages = {28-36},
    author = {Bailey, Timothy L. and Elkan, Charles},
    title = {Fitting a mixture model by expectation maximization to discover motifs in biopolymers},
    url = {https://www.aaai.org/Papers/ISMB/1994/ISMB94-004.pdf},
    year = {1994},
}
        </citation>
    </citations>
</tool>

13:57e5d9382f36

<tool id="meme_meme" name="MEME" version="@WRAPPER_VERSION@.0">
    <description>- Multiple EM for Motif Elicitation</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <command detect_errors="exit_code"><![CDATA[

    <tests>
        <test>
            <param name="input1" value="meme_input_1.fasta" ftype="fasta" dbkey="hg19"/>
            <param name="options_type_selector" value="basic"/>
            <param name="non_commercial_use" value="True"/>
            <output name="html_outfile" file="meme_output_test1.html" lines_diff="20"/>
            <output name="txt_outfile" file="meme_output_test1.txt" lines_diff="12"/>
            <output name="xml_outfile" file="meme_output_test1.xml" lines_diff="8"/>
        </test>
        <test>
            <param name="input1" value="meme_input_1.fasta" ftype="fasta" dbkey="hg19"/>
            <param name="options_type_selector" value="advanced"/>
            <param name="plib" value="prior30.plib" ftype="txt"/>
            <param name="non_commercial_use" value="True"/>
            <output name="html_outfile" file="meme_output_test2.html" lines_diff="20"/>
            <output name="txt_outfile" file="meme_output_test2.txt" lines_diff="12"/>
            <output name="xml_outfile" file="meme_output_test2.xml" lines_diff="8"/>
        </test>
    </tests>
    <help>

.. class:: warningmark

    booktitle = {Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology},
    pages = {28-36},
    author = {Bailey, Timothy L. and Elkan, Charles},
    title = {Fitting a mixture model by expectation maximization to discover motifs in biopolymers},
    url = {https://www.aaai.org/Papers/ISMB/1994/ISMB94-004.pdf},
    year = {1994}
}
        </citation>
    </citations>
</tool>