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comparison test-data/meme_output_test2.xml @ 20:faa378fa0c81 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
author iuc
date Mon, 14 Jul 2025 21:33:26 +0000
parents 19237efe98d1
children
comparison
equal deleted inserted replaced
19:7ce0fe11b411 20:faa378fa0c81
1 <alphabet_matrix>
2 <alphabet_array>
3 <value letter_id="A">-14</value>
4 <value letter_id="C">-179</value>
5 <value letter_id="G">114</value>
6 <value letter_id="T">-112</value>
7 </alphabet_array>
8 <alphabet_array>
9 <value letter_id="A">3</value>
10 <value letter_id="C">-1155</value>
11 <value letter_id="G">137</value>
12 <value letter_id="T">-270</value>
13 </alphabet_array>
14 <alphabet_array>
15 <value letter_id="A">-114</value>
16 <value letter_id="C">20</value>
17 <value letter_id="G">86</value>
18 <value letter_id="T">-71</value>
19 </alphabet_array>
20 <alphabet_array>
21 <value letter_id="A">3</value>
22 <value letter_id="C">-279</value>
23 <value letter_id="G">122</value>
24 <value letter_id="T">-170</value>
25 </alphabet_array>
26 <alphabet_array>
27 <value letter_id="A">-1155</value>
28 <value letter_id="C">-1155</value>
29 <value letter_id="G">-295</value>
30 <value letter_id="T">215</value>
31 </alphabet_array>
32 <alphabet_array>
33 <value letter_id="A">156</value>
34 <value letter_id="C">-179</value>
35 <value letter_id="G">-1155</value>
36 <value letter_id="T">-170</value>
37 </alphabet_array>
38 <alphabet_array>
39 <value letter_id="A">-1155</value>
40 <value letter_id="C">-1155</value>
41 <value letter_id="G">-1155</value>
42 <value letter_id="T">220</value>
43 </alphabet_array>
44 <alphabet_array>
45 <value letter_id="A">172</value>
46 <value letter_id="C">-279</value>
47 <value letter_id="G">-1155</value>
48 <value letter_id="T">-1155</value>
49 </alphabet_array>
50 <alphabet_array>
51 <value letter_id="A">125</value>
52 <value letter_id="C">-1155</value>
53 <value letter_id="G">-1155</value>
54 <value letter_id="T">46</value>
55 </alphabet_array>
56 <alphabet_array>
57 <value letter_id="A">167</value>
58 <value letter_id="C">-179</value>
59 <value letter_id="G">-1155</value>
60 <value letter_id="T">-1155</value>
61 </alphabet_array>
62 <alphabet_array>
63 <value letter_id="A">144</value>
64 <value letter_id="C">-1155</value>
65 <value letter_id="G">-63</value>
66 <value letter_id="T">-270</value>
67 </alphabet_array>
68 </alphabet_matrix>
69 </scores>
70 <probabilities>
71 <alphabet_matrix>
72 <alphabet_array>
73 <value letter_id="A">0.266667</value>
74 <value letter_id="C">0.066667</value>
75 <value letter_id="G">0.566667</value>
76 <value letter_id="T">0.100000</value>
77 </alphabet_array>
78 <alphabet_array>
79 <value letter_id="A">0.300000</value>
80 <value letter_id="C">0.000000</value>
81 <value letter_id="G">0.666667</value>
82 <value letter_id="T">0.033333</value>
83 </alphabet_array>
84 <alphabet_array>
85 <value letter_id="A">0.133333</value>
86 <value letter_id="C">0.266667</value>
87 <value letter_id="G">0.466667</value>
88 <value letter_id="T">0.133333</value>
89 </alphabet_array>
90 <alphabet_array>
91 <value letter_id="A">0.300000</value>
92 <value letter_id="C">0.033333</value>
93 <value letter_id="G">0.600000</value>
94 <value letter_id="T">0.066667</value>
95 </alphabet_array>
96 <alphabet_array>
97 <value letter_id="A">0.000000</value>
98 <value letter_id="C">0.000000</value>
99 <value letter_id="G">0.033333</value>
100 <value letter_id="T">0.966667</value>
101 </alphabet_array>
102 <alphabet_array>
103 <value letter_id="A">0.866667</value>
104 <value letter_id="C">0.066667</value>
105 <value letter_id="G">0.000000</value>
106 <value letter_id="T">0.066667</value>
107 </alphabet_array>
108 <alphabet_array>
109 <value letter_id="A">0.000000</value>
110 <value letter_id="C">0.000000</value>
111 <value letter_id="G">0.000000</value>
112 <value letter_id="T">1.000000</value>
113 </alphabet_array>
114 <alphabet_array>
115 <value letter_id="A">0.966667</value>
116 <value letter_id="C">0.033333</value>
117 <value letter_id="G">0.000000</value>
118 <value letter_id="T">0.000000</value>
119 </alphabet_array>
120 <alphabet_array>
121 <value letter_id="A">0.700000</value>
122 <value letter_id="C">0.000000</value>
123 <value letter_id="G">0.000000</value>
124 <value letter_id="T">0.300000</value>
125 </alphabet_array>
126 <alphabet_array>
127 <value letter_id="A">0.933333</value>
128 <value letter_id="C">0.066667</value>
129 <value letter_id="G">0.000000</value>
130 <value letter_id="T">0.000000</value>
131 </alphabet_array>
132 <alphabet_array>
133 <value letter_id="A">0.800000</value>
134 <value letter_id="C">0.000000</value>
135 <value letter_id="G">0.166667</value>
136 <value letter_id="T">0.033333</value>
137 </alphabet_array>
138 </alphabet_matrix>
139 </probabilities>
140 <regular_expression>
141 [GA][GA][GC][GA]TATA[AT]AA
142 </regular_expression>
143 <contributing_sites>
144 <contributing_site sequence_id="sequence_24" position="12" strand="plus" pvalue="4.51e-07" >
145 <left_flank>AAGGCCAGGA</left_flank>
146 <site>
147 <letter_ref letter_id="G"/>
148 <letter_ref letter_id="G"/>
149 <letter_ref letter_id="G"/>
150 <letter_ref letter_id="G"/>
151 <letter_ref letter_id="T"/>
152 <letter_ref letter_id="A"/>
153 <letter_ref letter_id="T"/>
154 <letter_ref letter_id="A"/>
155 <letter_ref letter_id="A"/>
156 <letter_ref letter_id="A"/>
157 <letter_ref letter_id="A"/>
158 </site>
159 <right_flank>GCCTGAGAGC</right_flank>
160 </contributing_site>
161 <contributing_site sequence_id="sequence_23" position="15" strand="plus" pvalue="2.22e-06" >
162 <left_flank>ATACCCAGGG</left_flank>
163 <site>
164 <letter_ref letter_id="A"/>
165 <letter_ref letter_id="G"/>
166 <letter_ref letter_id="G"/>
167 <letter_ref letter_id="G"/>
168 <letter_ref letter_id="T"/>
169 <letter_ref letter_id="A"/>
170 <letter_ref letter_id="T"/>
171 <letter_ref letter_id="A"/>
172 <letter_ref letter_id="A"/>
173 <letter_ref letter_id="A"/>
174 <letter_ref letter_id="A"/>
175 </site>
176 <right_flank>CCTCAGCAGC</right_flank>
177 </contributing_site>
178 <contributing_site sequence_id="sequence_13" position="13" strand="plus" pvalue="2.74e-06" >
179 <left_flank>CCACCAGCTT</left_flank>
180 <site>
181 <letter_ref letter_id="G"/>
182 <letter_ref letter_id="A"/>
183 <letter_ref letter_id="G"/>
184 <letter_ref letter_id="G"/>
185 <letter_ref letter_id="T"/>
186 <letter_ref letter_id="A"/>
187 <letter_ref letter_id="T"/>
188 <letter_ref letter_id="A"/>
189 <letter_ref letter_id="A"/>
190 <letter_ref letter_id="A"/>
191 <letter_ref letter_id="A"/>
192 </site>
193 <right_flank>AGCCCTGTAC</right_flank>
194 </contributing_site>
195 <contributing_site sequence_id="sequence_25" position="36" strand="plus" pvalue="4.86e-06" >
196 <left_flank>ACAGGCCCTG</left_flank>
197 <site>
198 <letter_ref letter_id="G"/>
199 <letter_ref letter_id="G"/>
200 <letter_ref letter_id="C"/>
201 <letter_ref letter_id="A"/>
202 <letter_ref letter_id="T"/>
203 <letter_ref letter_id="A"/>
204 <letter_ref letter_id="T"/>
205 <letter_ref letter_id="A"/>
206 <letter_ref letter_id="A"/>
207 <letter_ref letter_id="A"/>
208 <letter_ref letter_id="A"/>
209 </site>
210 <right_flank>GCC</right_flank>
211 </contributing_site>
212 <contributing_site sequence_id="sequence_21" position="7" strand="plus" pvalue="4.86e-06" >
213 <left_flank>CCAAGGA</left_flank>
214 <site>
215 <letter_ref letter_id="G"/>
216 <letter_ref letter_id="G"/>
217 <letter_ref letter_id="A"/>
218 <letter_ref letter_id="G"/>
219 <letter_ref letter_id="T"/>
220 <letter_ref letter_id="A"/>
221 <letter_ref letter_id="T"/>
222 <letter_ref letter_id="A"/>
223 <letter_ref letter_id="A"/>
224 <letter_ref letter_id="A"/>
225 <letter_ref letter_id="A"/>
226 </site>
227 <right_flank>GCCCCACAAA</right_flank>
228 </contributing_site>
229 <contributing_site sequence_id="sequence_19" position="9" strand="plus" pvalue="4.86e-06" >
230 <left_flank>CAGGCCCTG</left_flank>
231 <site>
232 <letter_ref letter_id="G"/>
233 <letter_ref letter_id="G"/>
234 <letter_ref letter_id="C"/>
235 <letter_ref letter_id="A"/>
236 <letter_ref letter_id="T"/>
237 <letter_ref letter_id="A"/>
238 <letter_ref letter_id="T"/>
239 <letter_ref letter_id="A"/>
240 <letter_ref letter_id="A"/>
241 <letter_ref letter_id="A"/>
242 <letter_ref letter_id="A"/>
243 </site>
244 <right_flank>GCCCCAGCAG</right_flank>
245 </contributing_site>
246 <contributing_site sequence_id="sequence_9" position="13" strand="plus" pvalue="4.86e-06" >
247 <left_flank>GATTCACTGA</left_flank>
248 <site>
249 <letter_ref letter_id="G"/>
250 <letter_ref letter_id="G"/>
251 <letter_ref letter_id="C"/>
252 <letter_ref letter_id="A"/>
253 <letter_ref letter_id="T"/>
254 <letter_ref letter_id="A"/>
255 <letter_ref letter_id="T"/>
256 <letter_ref letter_id="A"/>
257 <letter_ref letter_id="A"/>
258 <letter_ref letter_id="A"/>
259 <letter_ref letter_id="A"/>
260 </site>
261 <right_flank>GGCCCTCTGC</right_flank>
262 </contributing_site>
263 <contributing_site sequence_id="sequence_28" position="32" strand="plus" pvalue="6.48e-06" >
264 <left_flank>CCGGCGGGGC</left_flank>
265 <site>
266 <letter_ref letter_id="G"/>
267 <letter_ref letter_id="G"/>
268 <letter_ref letter_id="G"/>
269 <letter_ref letter_id="G"/>
270 <letter_ref letter_id="T"/>
271 <letter_ref letter_id="A"/>
272 <letter_ref letter_id="T"/>
273 <letter_ref letter_id="A"/>
274 <letter_ref letter_id="A"/>
275 <letter_ref letter_id="A"/>
276 <letter_ref letter_id="G"/>
277 </site>
278 <right_flank>GGGGCGG</right_flank>
279 </contributing_site>
280 <contributing_site sequence_id="sequence_20" position="4" strand="plus" pvalue="6.48e-06" >
281 <left_flank>CAGA</left_flank>
282 <site>
283 <letter_ref letter_id="G"/>
284 <letter_ref letter_id="G"/>
285 <letter_ref letter_id="G"/>
286 <letter_ref letter_id="G"/>
287 <letter_ref letter_id="T"/>
288 <letter_ref letter_id="A"/>
289 <letter_ref letter_id="T"/>
290 <letter_ref letter_id="A"/>
291 <letter_ref letter_id="A"/>
292 <letter_ref letter_id="A"/>
293 <letter_ref letter_id="G"/>
294 </site>
295 <right_flank>GTTCCGACCA</right_flank>
296 </contributing_site>
297 <contributing_site sequence_id="sequence_12" position="18" strand="plus" pvalue="6.48e-06" >
298 <left_flank>CACCAGAGCT</left_flank>
299 <site>
300 <letter_ref letter_id="G"/>
301 <letter_ref letter_id="G"/>
302 <letter_ref letter_id="G"/>
303 <letter_ref letter_id="A"/>
304 <letter_ref letter_id="T"/>
305 <letter_ref letter_id="A"/>
306 <letter_ref letter_id="T"/>
307 <letter_ref letter_id="A"/>
308 <letter_ref letter_id="T"/>
309 <letter_ref letter_id="A"/>
310 <letter_ref letter_id="A"/>
311 </site>
312 <right_flank>AGAAGGTTCT</right_flank>
313 </contributing_site>
314 <contributing_site sequence_id="sequence_15" position="21" strand="plus" pvalue="1.38e-05" >
315 <left_flank>AATCACTGAG</left_flank>
316 <site>
317 <letter_ref letter_id="G"/>
318 <letter_ref letter_id="A"/>
319 <letter_ref letter_id="T"/>
320 <letter_ref letter_id="G"/>
321 <letter_ref letter_id="T"/>
322 <letter_ref letter_id="A"/>
323 <letter_ref letter_id="T"/>
324 <letter_ref letter_id="A"/>
325 <letter_ref letter_id="A"/>
326 <letter_ref letter_id="A"/>
327 <letter_ref letter_id="A"/>
328 </site>
329 <right_flank>GTCCCAGGGA</right_flank>
330 </contributing_site>
331 <contributing_site sequence_id="sequence_11" position="16" strand="plus" pvalue="1.38e-05" >
332 <left_flank>CACTATTGAA</left_flank>
333 <site>
334 <letter_ref letter_id="G"/>
335 <letter_ref letter_id="A"/>
336 <letter_ref letter_id="T"/>
337 <letter_ref letter_id="G"/>
338 <letter_ref letter_id="T"/>
339 <letter_ref letter_id="A"/>
340 <letter_ref letter_id="T"/>
341 <letter_ref letter_id="A"/>
342 <letter_ref letter_id="A"/>
343 <letter_ref letter_id="A"/>
344 <letter_ref letter_id="A"/>
345 </site>
346 <right_flank>TTTCATTTGC</right_flank>
347 </contributing_site>
348 <contributing_site sequence_id="sequence_0" position="39" strand="plus" pvalue="1.41e-05" >
349 <left_flank>CCTCGGGACG</left_flank>
350 <site>
351 <letter_ref letter_id="T"/>
352 <letter_ref letter_id="G"/>
353 <letter_ref letter_id="G"/>
354 <letter_ref letter_id="G"/>
355 <letter_ref letter_id="T"/>
356 <letter_ref letter_id="A"/>
357 <letter_ref letter_id="T"/>
358 <letter_ref letter_id="A"/>
359 <letter_ref letter_id="T"/>
360 <letter_ref letter_id="A"/>
361 <letter_ref letter_id="A"/>
362 </site>
363 <right_flank></right_flank>
364 </contributing_site>
365 <contributing_site sequence_id="sequence_6" position="15" strand="plus" pvalue="1.61e-05" >
366 <left_flank>CCCACTACTT</left_flank>
367 <site>
368 <letter_ref letter_id="A"/>
369 <letter_ref letter_id="G"/>
370 <letter_ref letter_id="A"/>
371 <letter_ref letter_id="G"/>
372 <letter_ref letter_id="T"/>
373 <letter_ref letter_id="A"/>
374 <letter_ref letter_id="T"/>
375 <letter_ref letter_id="A"/>
376 <letter_ref letter_id="A"/>
377 <letter_ref letter_id="A"/>
378 <letter_ref letter_id="A"/>
379 </site>
380 <right_flank>TCATTCTGAG</right_flank>
381 </contributing_site>
382 <contributing_site sequence_id="sequence_22" position="2" strand="plus" pvalue="1.95e-05" >
383 <left_flank>GA</left_flank>
384 <site>
385 <letter_ref letter_id="G"/>
386 <letter_ref letter_id="A"/>
387 <letter_ref letter_id="C"/>
388 <letter_ref letter_id="A"/>
389 <letter_ref letter_id="T"/>
390 <letter_ref letter_id="A"/>
391 <letter_ref letter_id="T"/>
392 <letter_ref letter_id="A"/>
393 <letter_ref letter_id="A"/>
394 <letter_ref letter_id="A"/>
395 <letter_ref letter_id="A"/>
396 </site>
397 <right_flank>GCCAACATCC</right_flank>
398 </contributing_site>
399 <contributing_site sequence_id="sequence_14" position="17" strand="plus" pvalue="1.95e-05" >
400 <left_flank>CCCACCAGCA</left_flank>
401 <site>
402 <letter_ref letter_id="A"/>
403 <letter_ref letter_id="G"/>
404 <letter_ref letter_id="G"/>
405 <letter_ref letter_id="A"/>
406 <letter_ref letter_id="T"/>
407 <letter_ref letter_id="A"/>
408 <letter_ref letter_id="T"/>
409 <letter_ref letter_id="A"/>
410 <letter_ref letter_id="T"/>
411 <letter_ref letter_id="A"/>
412 <letter_ref letter_id="A"/>
413 </site>
414 <right_flank>AAGCTCAGGA</right_flank>
415 </contributing_site>
416 <contributing_site sequence_id="sequence_18" position="37" strand="plus" pvalue="2.16e-05" >
417 <left_flank>CGTGGTCGCG</left_flank>
418 <site>
419 <letter_ref letter_id="G"/>
420 <letter_ref letter_id="G"/>
421 <letter_ref letter_id="G"/>
422 <letter_ref letter_id="G"/>
423 <letter_ref letter_id="T"/>
424 <letter_ref letter_id="A"/>
425 <letter_ref letter_id="T"/>
426 <letter_ref letter_id="A"/>
427 <letter_ref letter_id="A"/>
428 <letter_ref letter_id="C"/>
429 <letter_ref letter_id="A"/>
430 </site>
431 <right_flank>GC</right_flank>
432 </contributing_site>
433 <contributing_site sequence_id="sequence_29" position="30" strand="plus" pvalue="3.04e-05" >
434 <left_flank>GCTGCCGGTG</left_flank>
435 <site>
436 <letter_ref letter_id="A"/>
437 <letter_ref letter_id="G"/>
438 <letter_ref letter_id="C"/>
439 <letter_ref letter_id="G"/>
440 <letter_ref letter_id="T"/>
441 <letter_ref letter_id="A"/>
442 <letter_ref letter_id="T"/>
443 <letter_ref letter_id="A"/>
444 <letter_ref letter_id="A"/>
445 <letter_ref letter_id="A"/>
446 <letter_ref letter_id="G"/>
447 </site>
448 <right_flank>GCCCTGGCG</right_flank>
449 </contributing_site>
450 <contributing_site sequence_id="sequence_4" position="12" strand="plus" pvalue="3.04e-05" >
451 <left_flank>CAGGTCTAAG</left_flank>
452 <site>
453 <letter_ref letter_id="A"/>
454 <letter_ref letter_id="G"/>
455 <letter_ref letter_id="C"/>
456 <letter_ref letter_id="A"/>
457 <letter_ref letter_id="T"/>
458 <letter_ref letter_id="A"/>
459 <letter_ref letter_id="T"/>
460 <letter_ref letter_id="A"/>
461 <letter_ref letter_id="T"/>
462 <letter_ref letter_id="A"/>
463 <letter_ref letter_id="A"/>
464 </site>
465 <right_flank>CTTGGAGTCC</right_flank>
466 </contributing_site>
467 <contributing_site sequence_id="sequence_5" position="0" strand="plus" pvalue="3.67e-05" >
468 <left_flank></left_flank>
469 <site>
470 <letter_ref letter_id="A"/>
471 <letter_ref letter_id="A"/>
472 <letter_ref letter_id="C"/>
473 <letter_ref letter_id="G"/>
474 <letter_ref letter_id="T"/>
475 <letter_ref letter_id="A"/>
476 <letter_ref letter_id="T"/>
477 <letter_ref letter_id="A"/>
478 <letter_ref letter_id="T"/>
479 <letter_ref letter_id="A"/>
480 <letter_ref letter_id="A"/>
481 </site>
482 <right_flank>ATGGTCCTGT</right_flank>
483 </contributing_site>
484 <contributing_site sequence_id="sequence_1" position="27" strand="plus" pvalue="3.93e-05" >
485 <left_flank>AGTCACAAGT</left_flank>
486 <site>
487 <letter_ref letter_id="G"/>
488 <letter_ref letter_id="A"/>
489 <letter_ref letter_id="G"/>
490 <letter_ref letter_id="T"/>
491 <letter_ref letter_id="T"/>
492 <letter_ref letter_id="A"/>
493 <letter_ref letter_id="T"/>
494 <letter_ref letter_id="A"/>
495 <letter_ref letter_id="A"/>
496 <letter_ref letter_id="A"/>
497 <letter_ref letter_id="A"/>
498 </site>
499 <right_flank>GGGTCGCACG</right_flank>
500 </contributing_site>
501 <contributing_site sequence_id="sequence_7" position="4" strand="plus" pvalue="5.65e-05" >
502 <left_flank>TCAG</left_flank>
503 <site>
504 <letter_ref letter_id="A"/>
505 <letter_ref letter_id="G"/>
506 <letter_ref letter_id="T"/>
507 <letter_ref letter_id="A"/>
508 <letter_ref letter_id="T"/>
509 <letter_ref letter_id="A"/>
510 <letter_ref letter_id="T"/>
511 <letter_ref letter_id="A"/>
512 <letter_ref letter_id="T"/>
513 <letter_ref letter_id="A"/>
514 <letter_ref letter_id="A"/>
515 </site>
516 <right_flank>ATGTTCCTGT</right_flank>
517 </contributing_site>
518 <contributing_site sequence_id="sequence_3" position="14" strand="plus" pvalue="6.24e-05" >
519 <left_flank>CCCAGGTTTC</left_flank>
520 <site>
521 <letter_ref letter_id="T"/>
522 <letter_ref letter_id="G"/>
523 <letter_ref letter_id="A"/>
524 <letter_ref letter_id="G"/>
525 <letter_ref letter_id="T"/>
526 <letter_ref letter_id="A"/>
527 <letter_ref letter_id="T"/>
528 <letter_ref letter_id="A"/>
529 <letter_ref letter_id="T"/>
530 <letter_ref letter_id="A"/>
531 <letter_ref letter_id="A"/>
532 </site>
533 <right_flank>TCGCCGCACC</right_flank>
534 </contributing_site>
535 <contributing_site sequence_id="sequence_16" position="22" strand="plus" pvalue="7.15e-05" >
536 <left_flank>AGTTTCAGTT</left_flank>
537 <site>
538 <letter_ref letter_id="G"/>
539 <letter_ref letter_id="G"/>
540 <letter_ref letter_id="C"/>
541 <letter_ref letter_id="A"/>
542 <letter_ref letter_id="T"/>
543 <letter_ref letter_id="C"/>
544 <letter_ref letter_id="T"/>
545 <letter_ref letter_id="A"/>
546 <letter_ref letter_id="A"/>
547 <letter_ref letter_id="A"/>
548 <letter_ref letter_id="A"/>
549 </site>
550 <right_flank>attatataac</right_flank>
551 </contributing_site>
552 <contributing_site sequence_id="sequence_27" position="36" strand="plus" pvalue="1.39e-04" >
553 <left_flank>TGCCTGGGTC</left_flank>
554 <site>
555 <letter_ref letter_id="C"/>
556 <letter_ref letter_id="A"/>
557 <letter_ref letter_id="G"/>
558 <letter_ref letter_id="G"/>
559 <letter_ref letter_id="T"/>
560 <letter_ref letter_id="A"/>
561 <letter_ref letter_id="T"/>
562 <letter_ref letter_id="A"/>
563 <letter_ref letter_id="A"/>
564 <letter_ref letter_id="A"/>
565 <letter_ref letter_id="G"/>
566 </site>
567 <right_flank>GCT</right_flank>
568 </contributing_site>
569 <contributing_site sequence_id="sequence_26" position="37" strand="plus" pvalue="1.39e-04" >
570 <left_flank>TGCCTGGGCC</left_flank>
571 <site>
572 <letter_ref letter_id="C"/>
573 <letter_ref letter_id="A"/>
574 <letter_ref letter_id="G"/>
575 <letter_ref letter_id="G"/>
576 <letter_ref letter_id="T"/>
577 <letter_ref letter_id="A"/>
578 <letter_ref letter_id="T"/>
579 <letter_ref letter_id="A"/>
580 <letter_ref letter_id="A"/>
581 <letter_ref letter_id="A"/>
582 <letter_ref letter_id="G"/>
583 </site>
584 <right_flank>GC</right_flank>
585 </contributing_site>
586 <contributing_site sequence_id="sequence_17" position="2" strand="plus" pvalue="4.81e-04" >
587 <left_flank>ga</left_flank>
588 <site>
589 <letter_ref letter_id="T"/>
590 <letter_ref letter_id="G"/>
591 <letter_ref letter_id="G"/>
592 <letter_ref letter_id="T"/>
593 <letter_ref letter_id="T"/>
594 <letter_ref letter_id="T"/>
595 <letter_ref letter_id="T"/>
596 <letter_ref letter_id="A"/>
597 <letter_ref letter_id="T"/>
598 <letter_ref letter_id="A"/>
599 <letter_ref letter_id="A"/>
600 </site>
601 <right_flank>ggggcctcac</right_flank>
602 </contributing_site>
603 <contributing_site sequence_id="sequence_8" position="13" strand="plus" pvalue="8.57e-04" >
604 <left_flank>TATAACTCAG</left_flank>
605 <site>
606 <letter_ref letter_id="G"/>
607 <letter_ref letter_id="T"/>
608 <letter_ref letter_id="T"/>
609 <letter_ref letter_id="G"/>
610 <letter_ref letter_id="G"/>
611 <letter_ref letter_id="A"/>
612 <letter_ref letter_id="T"/>
613 <letter_ref letter_id="A"/>
614 <letter_ref letter_id="A"/>
615 <letter_ref letter_id="A"/>
616 <letter_ref letter_id="A"/>
617 </site>
618 <right_flank>TAATTTGTAC</right_flank>
619 </contributing_site>
620 <contributing_site sequence_id="sequence_10" position="7" strand="plus" pvalue="1.47e-03" >
621 <left_flank>aaactta</left_flank>
622 <site>
623 <letter_ref letter_id="A"/>
624 <letter_ref letter_id="A"/>
625 <letter_ref letter_id="A"/>
626 <letter_ref letter_id="C"/>
627 <letter_ref letter_id="T"/>
628 <letter_ref letter_id="C"/>
629 <letter_ref letter_id="T"/>
630 <letter_ref letter_id="A"/>
631 <letter_ref letter_id="T"/>
632 <letter_ref letter_id="A"/>
633 <letter_ref letter_id="A"/>
634 </site>
635 <right_flank>acttaaaact</right_flank>
636 </contributing_site>
637 <contributing_site sequence_id="sequence_2" position="26" strand="plus" pvalue="2.64e-03" >
638 <left_flank>GGTGGGGGTG</left_flank>
639 <site>
640 <letter_ref letter_id="G"/>
641 <letter_ref letter_id="G"/>
642 <letter_ref letter_id="G"/>
643 <letter_ref letter_id="G"/>
644 <letter_ref letter_id="T"/>
645 <letter_ref letter_id="T"/>
646 <letter_ref letter_id="T"/>
647 <letter_ref letter_id="C"/>
648 <letter_ref letter_id="A"/>
649 <letter_ref letter_id="C"/>
650 <letter_ref letter_id="T"/>
651 </site>
652 <right_flank>GGTCCACTAT</right_flank>
653 </contributing_site>
654 </contributing_sites>
655 </motif>
1 </motifs> 656 </motifs>
2 <scanned_sites_summary p_thresh="0.0001"> 657 <scanned_sites_summary p_thresh="0.0001">
3 <scanned_sites sequence_id="sequence_0" pvalue="5.63e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="39" pvalue="1.41e-05"/> 658 <scanned_sites sequence_id="sequence_0" pvalue="5.63e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="39" pvalue="1.41e-05"/>
4 </scanned_sites> 659 </scanned_sites>
5 <scanned_sites sequence_id="sequence_1" pvalue="1.57e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="27" pvalue="3.93e-05"/> 660 <scanned_sites sequence_id="sequence_1" pvalue="1.57e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="27" pvalue="3.93e-05"/>