Mercurial > repos > iuc > meme_meme
comparison fimo_wrapper.py @ 8:e8b209806a20 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit bcfc8451fa622a6bf3aa31fa1e308c394feefb38
| author | iuc |
|---|---|
| date | Mon, 14 Nov 2016 13:17:41 -0500 |
| parents | 487ce3fa1822 |
| children | b8c05adb68da |
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| 7:487ce3fa1822 | 8:e8b209806a20 |
|---|---|
| 42 | 42 |
| 43 | 43 |
| 44 def stop_err(msg): | 44 def stop_err(msg): |
| 45 sys.stderr.write(msg) | 45 sys.stderr.write(msg) |
| 46 sys.exit(1) | 46 sys.exit(1) |
| 47 | |
| 47 | 48 |
| 48 parser = argparse.ArgumentParser() | 49 parser = argparse.ArgumentParser() |
| 49 parser.add_argument('--input_motifs', dest='input_motifs', help='MEME output formatted files for input to fimo') | 50 parser.add_argument('--input_motifs', dest='input_motifs', help='MEME output formatted files for input to fimo') |
| 50 parser.add_argument('--input_fasta', dest='input_fasta', help='Fassta sequence file') | 51 parser.add_argument('--input_fasta', dest='input_fasta', help='Fassta sequence file') |
| 51 parser.add_argument('--options_type', dest='options_type', help='Basic or Advance options') | 52 parser.add_argument('--options_type', dest='options_type', help='Basic or Advance options') |