diff test-data/meme_output_custom.txt @ 20:faa378fa0c81 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278

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+********************************************************************************
+MEME - Motif discovery tool
+********************************************************************************
+MEME version 5.5.8 (Release date: Thu May 15 15:01:46 2025 -0700)
+
+For further information on how to interpret these results please access https://meme-suite.org/meme.
+To get a copy of the MEME Suite software please access https://meme-suite.org.
+
+********************************************************************************
+
+
+********************************************************************************
+REFERENCE
+********************************************************************************
+If you use this program in your research, please cite:
+
+Timothy L. Bailey and Charles Elkan,
+"Fitting a mixture model by expectation maximization to
+discover motifs in biopolymers",
+Proceedings of the Second International Conference on Intelligent Systems
+for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.
+********************************************************************************
+
+
+********************************************************************************
+ALPHABET "DNA with covalent modifications" DNA-LIKE
+********************************************************************************
+A "Adenine" 8510A8 ~ T "Thymine" A89610
+C "Cytosine" A50026 ~ G "Guanine" 313695
+a "N6-methyladenine" 8510A8 ~ t "Thymine_lowercase" 756BB1
+c "5-Carboxylcytosine" FEE090 ~ 4 "Guanine:5-Carboxylcytosine" E0F3F8
+f "5-Formylcytosine" FDAE61 ~ 3 "Guanine:5-Formylcytosine" ABD9E9
+g "modified_g" 00897B ~ 5 "cytosine_lowercase" 53698A
+h "5-Hydroxymethylcytosine" F46D43 ~ 2 "Guanine:5-Hydroxymethylcytosine" 74ADD1
+m "5-Methylcytosine" D73027 ~ 1 "Guanine:5-Methylcytosine" 4575B4
+? = ACGTacfghmt12345
+********************************************************************************
+
+********************************************************************************
+TRAINING SET
+********************************************************************************
+PRIMARY SEQUENCES= Galaxy_FASTA_Input
+CONTROL SEQUENCES= --none--
+Sequence name            Weight Length  Sequence name            Weight Length  
+-------------            ------ ------  -------------            ------ ------  
+chr21_19617074_19617124_ 1.0000     50  chr21_26934381_26934431_ 1.0000     50  
+chr21_28217753_28217803_ 1.0000     50  chr21_31710037_31710087_ 1.0000     50  
+chr21_31744582_31744632_ 1.0000     50  chr21_31768316_31768366_ 1.0000     50  
+chr21_31914206_31914256_ 1.0000     50  chr21_31933633_31933683_ 1.0000     50  
+chr21_31962741_31962791_ 1.0000     50  chr21_31964683_31964733_ 1.0000     50  
+chr21_31973364_31973414_ 1.0000     50  chr21_31992870_31992920_ 1.0000     50  
+chr21_32185595_32185645_ 1.0000     50  chr21_32202076_32202126_ 1.0000     50  
+chr21_32253899_32253949_ 1.0000     50  chr21_32410820_32410870_ 1.0000     50  
+chr21_36411748_36411798_ 1.0000     50  chr21_37838750_37838800_ 1.0000     50  
+chr21_45705687_45705737_ 1.0000     50  chr21_45971413_45971463_ 1.0000     50  
+chr21_45978668_45978718_ 1.0000     50  chr21_45993530_45993580_ 1.0000     50  
+chr21_46020421_46020471_ 1.0000     50  chr21_46031920_46031970_ 1.0000     50  
+chr21_46046964_46047014_ 1.0000     50  chr21_46057197_46057247_ 1.0000     50  
+chr21_46086869_46086919_ 1.0000     50  chr21_46102103_46102153_ 1.0000     50  
+chr21_47517957_47518007_ 1.0000     50  chr21_47575506_47575556_ 1.0000     50  
+********************************************************************************
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