view test-data/streme_output_test2.xml @ 20:faa378fa0c81 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278

    <alphabet name="DNA with covalent modifications" like="dna">
      <letter id="A" symbol="A" complement="T" name="Adenine" colour="8510A8"/>
      <letter id="C" symbol="C" complement="G" name="Cytosine" colour="A50026"/>
      <letter id="G" symbol="G" complement="C" name="Guanine" colour="313695"/>
      <letter id="T" symbol="T" complement="A" name="Thymine" colour="A89610"/>
      <letter id="a" symbol="a" complement="t" name="N6-methyladenine" colour="8510A8"/>
      <letter id="c" symbol="c" complement="4" name="5-Carboxylcytosine" colour="FEE090"/>
      <letter id="f" symbol="f" complement="3" name="5-Formylcytosine" colour="FDAE61"/>
      <letter id="g" symbol="g" complement="5" name="modified_g" colour="00897B"/>
      <letter id="h" symbol="h" complement="2" name="5-Hydroxymethylcytosine" colour="F46D43"/>
      <letter id="m" symbol="m" complement="1" name="5-Methylcytosine" colour="D73027"/>
      <letter id="t" symbol="t" complement="a" name="Thymine_lowercase" colour="756BB1"/>
      <letter id="n1" symbol="1" complement="m" name="Guanine:5-Methylcytosine" colour="4575B4"/>
      <letter id="n2" symbol="2" complement="h" name="Guanine:5-Hydroxymethylcytosine" colour="74ADD1"/>
      <letter id="n3" symbol="3" complement="f" name="Guanine:5-Formylcytosine" colour="ABD9E9"/>
      <letter id="n4" symbol="4" complement="c" name="Guanine:5-Carboxylcytosine" colour="E0F3F8"/>
      <letter id="n5" symbol="5" complement="g" name="cytosine_lowercase" colour="53698A"/>
      <letter id="x3F" symbol="?" equals="ACGTacfghmt12345"/>
    </alphabet>
    <strands>both</strands>
    <sequence_db A="0.218" C="0.24" G="0.24" T="0.218" a="0.0266" c="0.0125" f="0" g="0.00313" h="0" m="0" t="0.0266" n1="0" n2="0" n3="0" n4="0.0125" n5="0.00313"/>
    <background_frequencies source="--negatives--" order="0">
      <alphabet_array>
        <value letter_id="A">0.218</value>
        <value letter_id="C">0.24</value>
        <value letter_id="G">0.24</value>
        <value letter_id="T">0.218</value>
        <value letter_id="a">0.0266</value>
        <value letter_id="c">0.0125</value>
        <value letter_id="f">1.96e-05</value>
        <value letter_id="g">0.00315</value>
        <value letter_id="h">1.96e-05</value>
        <value letter_id="m">1.96e-05</value>
        <value letter_id="t">0.0266</value>
        <value letter_id="n1">1.96e-05</value>
        <value letter_id="n2">1.96e-05</value>
        <value letter_id="n3">1.96e-05</value>
        <value letter_id="n4">0.0125</value>
        <value letter_id="n5">0.00315</value>