Mercurial > repos > iuc > meme_psp_gen
annotate test-data/fimo_output_test2.html @ 6:5f95d385a33c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
author | iuc |
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date | Sat, 09 Apr 2022 08:33:29 +0000 |
parents | ff2f53a32d0e |
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rev | line source |
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6
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
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1 <td style="padding-left: 5em; padding-right: 2em">alphabet = DNA</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
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2 <td style="padding-left: 5em; padding-right: 2em">max stored scores = 100000</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
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3 </tr> <tr> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
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4 <td style="padding-right: 2em">allow clobber = false</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
5 <td style="padding-left: 5em; padding-right: 2em">compute q-values = true</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
6 <td style="padding-left: 5em; padding-right: 2em">parse genomic coord. = false</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
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7 </tr> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
8 <tr> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
9 <td style="padding-right: 2em">text only = false</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
10 <td style="padding-left: 5em; padding-right: 2em">scan both strands = true</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
11 <td style="padding-left: 5em; padding-right: 2em">max strand = false</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
12 </tr> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
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13 <tr> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
14 <td style="padding-right: 2em">threshold type = p-value</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
15 <td style="padding-left: 5em; padding-right: 2em">output theshold = 0.0001</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
16 <td style="padding-left: 5em; padding-right: 2em">pseudocount = 0.1</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
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17 </tr> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
18 <tr> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
19 <td style="padding-right: 2em">alpha = 1</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
20 <td style="padding-left: 5em; padding-right: 2em">verbosity = 2</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
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21 <td style="padding-left: 5em; padding-right: 2em"></td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
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22 </tr> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
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23 |
2
b48e673af4e8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
iuc
parents:
diff
changeset
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24 </table> |
6
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
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25 </pre> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
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26 <p> |
2
b48e673af4e8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
iuc
parents:
diff
changeset
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27 This information can be useful in the event you wish to report a |
b48e673af4e8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
iuc
parents:
diff
changeset
|
28 problem with the FIMO software. |
6
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
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29 </p> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
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30 <hr> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
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31 <span style="background-color: #DDDDFF"><a href="#top_buttons"><b>Go to top</b></a></span> |
2
b48e673af4e8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
iuc
parents:
diff
changeset
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32 </body> |
b48e673af4e8
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
iuc
parents:
diff
changeset
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33 </html> |