Database and Motifs High-scoring Motif Occurences Debugging Information Results in TSV Format Results in GFF3 Format
FIMO - Motif search tool
FIMO version 5.0.5, (Release date: Mon Mar 18 20:12:19 2019 -0700) For further information on how to interpret these results please access http://meme-suite.org/doc/fimo-output-format.html.
To get a copy of the FIMO software please access http://meme-suite.org

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011.

DATABASE AND MOTIFS
Database contains 1 sequences, 16569 residues
A 0.278 C 0.222 G 0.222 T 0.278

SECTION I: HIGH-SCORING MOTIF OCCURENCES
There were 11 motif occurences with a p-value less than 0.0001. The full set of motif occurences can be seen in the TSV (tab-delimited values) output file the GFF3 file which may be suitable for uploading to the (assuming the FASTA input sequences included genomic coordinates in UCSC or Galaxy format), or the XML file The p-value of a motif occurrence is defined as the probability of a random sequence of the same length as the motif matching that position of the sequence with as good or better a score. The score for the match of a position in a sequence to a motif is computed by summing the appropriate entries from each column of the position-dependent scoring matrix that represents the motif. The q-value of a motif occurrence is defined as the false discovery rate if the occurrence is accepted as significant.
  • The table is sorted by increasing p-value.
  • Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence CCAGCAY DREME-5 chrM + 510 516 4.15e-05 0.683 CCAGCAC 2093 2099 8.2e-05 0.332 ACTAACA
    DEBUGGING INFORMATION
    Command line: Settings: This information can be useful in the event you wish to report a problem with the FIMO software.