Mercurial > repos > iuc > meme_psp_gen
comparison test-data/meme_output_html_2.html @ 0:a0fa4efeeee3 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 3f116ddc83447056068573320c148a9bfca9aa2e
| author | iuc |
|---|---|
| date | Wed, 23 Aug 2017 20:57:34 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:a0fa4efeeee3 |
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| 1 <!DOCTYPE HTML> | |
| 2 <html> | |
| 3 <head> | |
| 4 <meta charset="UTF-8"> | |
| 5 <title>MEME</title> | |
| 6 <script> | |
| 7 // @JSON_VAR data | |
| 8 var data = { | |
| 9 "program": "MEME", | |
| 10 "stop_reason": "Stopped because requested number of motifs (1) found.", | |
| 11 "cmd": [ | |
| 12 "meme", | |
| 13 ], | |
| 14 "options": { | |
| 15 "mod": "zoops", | |
| 16 "revcomp": false, | |
| 17 "nmotifs": 1, | |
| 18 "minw": 8, | |
| 19 "maxw": 50, | |
| 20 "minsites": 2, | |
| 21 "maxsites": 30, | |
| 22 "wnsites": 0.8, | |
| 23 "spmap": "uni", | |
| 24 "spfuzz": 0.5, | |
| 25 "maxwords": -1, | |
| 26 "prior": "dirichlet", | |
| 27 "b": 0.01, | |
| 28 "maxiter": 50, | |
| 29 "distance": 0.001, | |
| 30 "wg": 11, | |
| 31 "ws": 1, | |
| 32 "noendgaps": false, | |
| 33 "substring": true | |
| 34 }, | |
| 35 "alphabet": { | |
| 36 "name": "DNA", | |
| 37 "like": "dna", | |
| 38 "ncore": 4, | |
| 39 "symbols": [ | |
| 40 { | |
| 41 "symbol": "A", | |
| 42 "name": "Adenine", | |
| 43 "colour": "CC0000", | |
| 44 "complement": "T" | |
| 45 }, { | |
| 46 "symbol": "C", | |
| 47 "name": "Cytosine", | |
| 48 "colour": "0000CC", | |
| 49 "complement": "G" | |
| 50 }, { | |
| 51 "symbol": "G", | |
| 52 "name": "Guanine", | |
| 53 "colour": "FFB300", | |
| 54 "complement": "C" | |
| 55 }, { | |
| 56 "symbol": "T", | |
| 57 "aliases": "U", | |
| 58 "name": "Thymine", | |
| 59 "colour": "008000", | |
| 60 "complement": "A" | |
| 61 }, { | |
| 62 "symbol": "N", | |
| 63 "aliases": "X.", | |
| 64 "name": "Any base", | |
| 65 "equals": "ACGT" | |
| 66 }, { | |
| 67 "symbol": "V", | |
| 68 "name": "Not T", | |
| 69 "equals": "ACG" | |
| 70 }, { | |
| 71 "symbol": "H", | |
| 72 "name": "Not G", | |
| 73 "equals": "ACT" | |
| 74 }, { | |
| 75 "symbol": "D", | |
| 76 "name": "Not C", | |
| 77 "equals": "AGT" | |
| 78 }, { | |
| 79 "symbol": "B", | |
| 80 "name": "Not A", | |
| 81 "equals": "CGT" | |
| 82 }, { | |
| 83 "symbol": "M", | |
| 84 "name": "Amino", | |
| 85 "equals": "AC" | |
| 86 }, { | |
| 87 "symbol": "R", | |
| 88 "name": "Purine", | |
| 89 "equals": "AG" |