Mercurial > repos > iuc > meme_psp_gen
comparison test-data/dreme_output_test1.txt @ 7:47e7ae719765 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 93fe7345e2b6a97000975d978bf06513b3a442d9
| author | iuc |
|---|---|
| date | Thu, 29 Aug 2024 10:19:24 +0000 |
| parents | 5f95d385a33c |
| children |
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| 6:5f95d385a33c | 7:47e7ae719765 |
|---|---|
| 1 MOTIF UUYUCY DREME-1 | |
| 2 | |
| 3 # Word Pos Neg P-value E-value | |
| 4 # BEST UUYUCY 387 210 2.6e-018 1.2e-013 | |
| 5 # UUUUCC 147 75 1.8e-007 8.1e-003 | |
| 6 # UUUUCU 155 94 2.2e-005 1.0e+000 | |
| 7 # UUCUCU 94 51 1.3e-004 6.1e+000 | |
| 8 # UUCUCC 75 42 1.1e-003 5.0e+001 | |
| 9 | |
| 10 letter-probability matrix: alength= 4 w= 6 nsites= 459 E= 1.2e-013 | |
| 11 0.000000 0.000000 0.000000 1.000000 | |
| 12 0.000000 0.000000 0.000000 1.000000 | |
| 13 0.000000 0.294118 0.000000 0.705882 | |
| 14 0.000000 0.000000 0.000000 1.000000 | |
| 15 0.000000 1.000000 0.000000 0.000000 | |
| 16 0.000000 0.474946 0.000000 0.525054 | |
| 17 | |
| 18 | |
| 19 MOTIF YAGG DREME-2 | |
| 20 | |
| 21 # Word Pos Neg P-value E-value | |
| 22 # BEST YAGG 600 416 1.1e-016 5.1e-012 | |
| 23 # CAGG 441 304 1.5e-010 6.6e-006 | |
| 24 # UAGG 232 165 1.1e-004 4.7e+000 | |
| 25 | |
| 26 letter-probability matrix: alength= 4 w= 4 nsites= 793 E= 5.1e-012 | |
| 27 0.000000 0.692308 0.000000 0.307692 | |
| 28 1.000000 0.000000 0.000000 0.000000 | |
| 29 0.000000 0.000000 1.000000 0.000000 | |
| 30 0.000000 0.000000 1.000000 0.000000 | |
| 31 | |
| 32 | |
| 33 MOTIF GAAGAW DREME-3 | |
| 34 | |
| 35 # Word Pos Neg P-value E-value | |
| 36 # BEST GAAGAW 81 22 8.2e-010 3.4e-005 | |
| 37 # GAAGAU 45 7 2.4e-008 9.9e-004 | |
| 38 # GAAGAA 40 16 7.9e-004 3.3e+001 | |
| 39 | |
| 40 letter-probability matrix: alength= 4 w= 6 nsites= 89 E= 3.4e-005 | |
| 41 0.000000 0.000000 1.000000 0.000000 | |
| 42 1.000000 0.000000 0.000000 0.000000 | |
| 43 1.000000 0.000000 0.000000 0.000000 | |
| 44 0.000000 0.000000 1.000000 0.000000 | |
| 45 1.000000 0.000000 0.000000 0.000000 | |
| 46 0.494382 0.000000 0.000000 0.505618 | |
| 47 | |
| 48 | |
| 49 MOTIF SMUGGA DREME-4 | |
| 50 | |
| 51 # Word Pos Neg P-value E-value | |
| 52 # BEST SMUGGA 110 47 9.1e-008 3.7e-003 | |
| 53 # GAUGGA 22 6 1.7e-003 7.1e+001 | |
| 54 # GCUGGA 33 14 3.6e-003 1.5e+002 | |
| 55 # CCUGGA 32 15 8.6e-003 3.5e+002 | |
| 56 # CAUGGA 29 13 9.1e-003 3.7e+002 | |
| 57 | |
| 58 letter-probability matrix: alength= 4 w= 6 nsites= 119 E= 3.7e-003 | |
| 59 0.000000 0.529412 0.470588 0.000000 | |
| 60 0.428571 0.571429 0.000000 0.000000 | |
| 61 0.000000 0.000000 0.000000 1.000000 | |
| 62 0.000000 0.000000 1.000000 0.000000 | |
| 63 0.000000 0.000000 1.000000 0.000000 | |
| 64 1.000000 0.000000 0.000000 0.000000 |