Mercurial > repos > iuc > meme_psp_gen

diff test-data/meme_output_html_2.html @ 0:a0fa4efeeee3 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 3f116ddc83447056068573320c148a9bfca9aa2e
author: iuc
date: Wed, 23 Aug 2017 20:57:34 -0400
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/meme_output_html_2.html	Wed Aug 23 20:57:34 2017 -0400
@@ -0,0 +1,89 @@
+<!DOCTYPE HTML>
+<html>
+  <head>
+    <meta charset="UTF-8">
+    <title>MEME</title>
+    <script>
+      // @JSON_VAR data
+      var data = {
+        "program": "MEME",
+        "stop_reason": "Stopped because requested number of motifs (1) found.",
+        "cmd": [
+          "meme",
+        ],
+        "options": {
+          "mod": "zoops",
+          "revcomp": false,
+          "nmotifs": 1,
+          "minw": 8,
+          "maxw": 50,
+          "minsites": 2,
+          "maxsites": 30,
+          "wnsites": 0.8,
+          "spmap": "uni",
+          "spfuzz": 0.5,
+          "maxwords": -1,
+          "prior": "dirichlet",
+          "b": 0.01,
+          "maxiter": 50,
+          "distance": 0.001,
+          "wg": 11,
+          "ws": 1,
+          "noendgaps": false,
+          "substring": true
+        },
+        "alphabet": {
+          "name": "DNA",
+          "like": "dna",
+          "ncore": 4,
+          "symbols": [
+            {
+              "symbol": "A",
+              "name": "Adenine",
+              "colour": "CC0000",
+              "complement": "T"
+            }, {
+              "symbol": "C",
+              "name": "Cytosine",
+              "colour": "0000CC",
+              "complement": "G"
+            }, {
+              "symbol": "G",
+              "name": "Guanine",
+              "colour": "FFB300",
+              "complement": "C"
+            }, {
+              "symbol": "T",
+              "aliases": "U",
+              "name": "Thymine",
+              "colour": "008000",
+              "complement": "A"
+            }, {
+              "symbol": "N",
+              "aliases": "X.",
+              "name": "Any base",
+              "equals": "ACGT"
+            }, {
+              "symbol": "V",
+              "name": "Not T",
+              "equals": "ACG"
+            }, {
+              "symbol": "H",
+              "name": "Not G",
+              "equals": "ACT"
+            }, {
+              "symbol": "D",
+              "name": "Not C",
+              "equals": "AGT"
+            }, {
+              "symbol": "B",
+              "name": "Not A",
+              "equals": "CGT"
+            }, {
+              "symbol": "M",
+              "name": "Amino",
+              "equals": "AC"
+            }, {
+              "symbol": "R",
+              "name": "Purine",
+              "equals": "AG"