diff meme_psp_gen.xml @ 2:b48e673af4e8 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b

--- a/meme_psp_gen.xml	Wed Apr 25 12:13:08 2018 -0400
+++ b/meme_psp_gen.xml	Thu May 17 14:11:15 2018 -0400
@@ -5,9 +5,11 @@
     </macros>
     <expand macro="requirements" />
     <command detect_errors="exit_code"><![CDATA[
+ln -s '${primary_sequence}' meme_psp_input_pos.fa && 
+ln -s '${control_sequence}' meme_psp_input_neg.fa &&
 psp-gen
--pos '$primary_sequence'
--neg '$control_sequence'
+-pos meme_psp_input_pos.fa
+-neg meme_psp_input_neg.fa
 -minw $adv.minw
 -maxw $adv.maxw
 $adv.alphabet
@@ -84,8 +86,8 @@
             <param name="report_scores" value="yes"/>
             <param name="verbose" value="-verbose"/>
             <param name="non_commercial_use" value="NON_COMMERCIAL_USE"/>
-            <output name="output_psp" file="output.memepsp"/>
-            <output name="output_tabular" file="meme_psp_gen_reports_output.tabular" compare="contains"/>
+            <output name="output_psp" file="meme_psp_output_test1.memepsp"/>
+            <output name="output_tabular" file="meme_psp_output_test1.tabular"/>
         </test>
     </tests>
     <help>