Mercurial > repos > iuc > meme_psp_gen

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    <title>DREME</title>
    <script>
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          "name": "RNA",
          "like": "rna",
          "ncore": 4,
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          "count": 1000,
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            "db": 0,
            "id": "UUYUCY",
            "alt": "DREME-1",
            "len": 6,
            "nsites": 459,
            "evalue": "1.2e-013",
            "p": 387,
            "n": 210,
            "pvalue": "2.6e-018",
            "unerased_evalue": "1.2e-013",
            "pwm": [
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                "seq": "UUUUCC",
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                "pvalue": "1.8e-007",
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                "seq": "UUCUCC",
                "p": 75,
                "n": 42,
                "pvalue": "1.1e-003",
                "evalue": "5.0e+001"
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        The name of the motif uses the IUPAC codes for nucleotides which has
        a different letter to represent each of the 15 possible combinations.
        The name is itself a representation of the motif though the position
        weight matrix is not directly equivalent as it is generated from the
        sites found that matched the letters given in the name.
      <p>The E-value is the enrichment p-value times the number of candidate
        motifs tested.</p>
      <p>The enrichment p-value is calculated using Fisher's Exact Test for
        enrichment of the motif in the positive sequences.</p>
      <p>Note that the counts used in Fisher's Exact Test are made after
        erasing sites that match previously found motifs.</p>
      <p>The E-value of the motif calculated without erasing the sites of
        previously found motifs.</p>
      <p>Show more information on the motif.</p>
      <p>Submit your motif to another MEME Suite program or download your motif.</p>
      <h5>Supported Programs</h5>
        <dt>Tomtom</dt>
        <dd>Tomtom is a tool for searching for similar known motifs.
        <dt>MAST</dt>
        <dd>MAST is a tool for searching biological sequence databases for
          sequences that contain one or more of a group of known motifs.
        <dt>FIMO</dt>
        <dd>FIMO is a tool for searching biological sequence databases for
          sequences that contain one or more known motifs.
        <dt>GOMo</dt>
        <dd>GOMo is a tool for identifying possible roles (Gene Ontology
          terms) for DNA binding motifs.
        <dt>SpaMo</dt>
        <dd>SpaMo is a tool for inferring possible transcription factor
          complexes by finding motifs with enriched spacings.
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author	iuc
date	Wed, 11 Dec 2019 18:04:34 -0500
parents	b48e673af4e8
children	5f95d385a33c