Mercurial > repos > iuc > meningotype
annotate check_output.py @ 1:7f88b804fc0c draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit ac4610f4f81de5ab3a71fc28cbe3cdb1696ef667
| author | iuc | 
|---|---|
| date | Wed, 13 Mar 2024 11:52:59 +0000 | 
| parents | b5f872c50249 | 
| children | 
| rev | line source | 
|---|---|
| 
0
 
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
 
iuc 
parents:  
diff
changeset
 | 
1 #!/usr/bin/env python3 | 
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b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
 
iuc 
parents:  
diff
changeset
 | 
2 | 
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b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
 
iuc 
parents:  
diff
changeset
 | 
3 import argparse | 
| 
 
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
 
iuc 
parents:  
diff
changeset
 | 
4 import sys | 
| 
 
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
 
iuc 
parents:  
diff
changeset
 | 
5 | 
| 
 
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
 
iuc 
parents:  
diff
changeset
 | 
6 if __name__ == '__main__': | 
| 
 
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
 
iuc 
parents:  
diff
changeset
 | 
7 parser = argparse.ArgumentParser() | 
| 
 
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
 
iuc 
parents:  
diff
changeset
 | 
8 parser.add_argument('meningotype_file', type=argparse.FileType()) | 
| 
 
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
 
iuc 
parents:  
diff
changeset
 | 
9 args = parser.parse_args() | 
| 
 
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
 
iuc 
parents:  
diff
changeset
 | 
10 for line in args.meningotype_file: | 
| 
 
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
 
iuc 
parents:  
diff
changeset
 | 
11 if 'ERROR:' in line: | 
| 
 
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
 
iuc 
parents:  
diff
changeset
 | 
12 sys.exit('Found error in meningotype output: ' + line.strip()) | 
