Mercurial > repos > iuc > meningotype
annotate update_db.py @ 0:b5f872c50249 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
author | iuc |
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date | Tue, 13 Jun 2023 11:04:30 +0000 |
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b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
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1 #!/usr/bin/env python3 |
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
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2 |
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
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changeset
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3 import pathlib |
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff
changeset
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4 import shutil |
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff
changeset
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5 import subprocess |
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
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6 |
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff
changeset
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7 import meningotype |
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
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8 |
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff
changeset
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9 if __name__ == '__main__': |
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff
changeset
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10 db_path = 'db' |
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff
changeset
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11 original_db_path = pathlib.Path(meningotype.__file__).parent / 'db' |
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff
changeset
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12 shutil.copytree(original_db_path, db_path) |
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff
changeset
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13 cmd = ["meningotype", "--updatedb", "--db", db_path] |
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff
changeset
|
14 subprocess.run(cmd) |