Mercurial > repos > iuc > meningotype
annotate update_db.py @ 1:7f88b804fc0c draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit ac4610f4f81de5ab3a71fc28cbe3cdb1696ef667
author | iuc |
---|---|
date | Wed, 13 Mar 2024 11:52:59 +0000 |
parents | b5f872c50249 |
children |
rev | line source |
---|---|
0
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff
changeset
|
1 #!/usr/bin/env python3 |
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff
changeset
|
2 |
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff
changeset
|
3 import pathlib |
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff
changeset
|
4 import shutil |
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff
changeset
|
5 import subprocess |
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff
changeset
|
6 |
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff
changeset
|
7 import meningotype |
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff
changeset
|
8 |
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff
changeset
|
9 if __name__ == '__main__': |
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff
changeset
|
10 db_path = 'db' |
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff
changeset
|
11 original_db_path = pathlib.Path(meningotype.__file__).parent / 'db' |
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff
changeset
|
12 shutil.copytree(original_db_path, db_path) |
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff
changeset
|
13 cmd = ["meningotype", "--updatedb", "--db", db_path] |
b5f872c50249
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meningotype commit b4e0bbb9a2a23cbac9137a96d59bc1775c23c8a5
iuc
parents:
diff
changeset
|
14 subprocess.run(cmd) |