comparison macros.xml @ 14:05ad7d35ce92 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 3c1a0c4a94f78437c6df74b5348826e33e734a05

13:327d9f4cc95f

<?xml version="1.0"?>
<macros>
    <token name="@TOOL_VERSION@">4.0.6</token>
    <token name="@VERSION_SUFFIX@">3</token>
    <token name="@PROFILE@">22.05</token>
    <!-- Metaphlan DB compatible with this version of Metaphlan
    v4 introduced single genome level bins (SGB) and the index syntax differs from previous versions --> 
    <token name="@IDX_VERSION@">SGB</token>
    <token name="@IDX_DATA_TABLE@">metaphlan_database_versioned</token>

    <xml name="citations">
        <citations>
            <citation type="doi">10.7554/eLife.65088</citation>
        </citations>
    </xml>
</macros>

14:05ad7d35ce92

<?xml version="1.0"?>
<macros>
    <token name="@TOOL_VERSION@">4.1.1</token>
    <token name="@VERSION_SUFFIX@">0</token>
    <token name="@PROFILE@">22.05</token>
    <!-- Metaphlan DB compatible with this version of Metaphlan
    v4 introduced single genome level bins (SGB) and the index syntax differs from previous versions --> 
    <token name="@IDX_VERSION@">SGB</token>
    <token name="@IDX_DATA_TABLE@">metaphlan_database_versioned</token>

    <xml name="citations">
        <citations>
            <citation type="doi">10.7554/eLife.65088</citation>
        </citations>
    </xml>

    <xml name="subsample_common">
        <param argument="--mapping_subsampling" type="boolean" truevalue="--mapping_subsampling" falsevalue="" label="Subsampling on the mapping results" help="instead of on the reads"/>
        <param argument="--subsampling_seed" type="integer" optional="true" label="Subsampling seed" help="No value: random"/>
    </xml>
</macros>