view macros.xml @ 3:3f05bf162005 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"

<?xml version="1.0"?>
<macros>
    <token name="@TOOL_VERSION@">3.0.7</token>
    <token name="@VERSION_SUFFIX@">0</token>
    <token name="@PROFILE@">20.01</token>
    <xml name="edam_ontology">
        <edam_topics>
            <edam_topic>topic_3174</edam_topic>
            <edam_topic>topic_0194</edam_topic>
        </edam_topics>
        <edam_operations>
            <edam_operation>operation_2478</edam_operation>
            <edam_operation>operation_0324</edam_operation>
        </edam_operations>
    </xml>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@TOOL_VERSION@">metaphlan</requirement>
            <yield/>
        </requirements>
    </xml>
    <xml name="citations">
        <citations>
            <citation type="doi">1101/2020.11.19.388223</citation>
        </citations>
    </xml>
    <token name="@FILE_FORMATS@">fastq,fastq.gz,fastq.bz2,fasta,fasta.gz,fasta.bz2</token>
    <xml name="tax_lev">
        <param argument="--tax_lev" type="select" label="Taxonomic level for the relative abundance output">
            <option value="a" selected="true">All taxonomic levels</option>
            <option value="k">Kingdoms only</option>
            <option value="p">Phyla only</option>
            <option value="c">Classes only</option>
            <option value="o">Orders only</option>
            <option value="f">Families only</option>
            <option value="g">Genera only</option>
            <option value="s">Species only</option>
        </param>
    </xml>
</macros>