Mercurial > repos > iuc > merqury
view test-data/output_05_log.txt @ 2:589078edd230 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/merqury commit 726df1fe4e8d703f62e1b9062bab1627c94ce746"
| author | iuc |
|---|---|
| date | Mon, 25 Apr 2022 11:20:41 +0000 |
| parents | |
| children | f8113c25bc6b |
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read: read-db.meryl Haplotype dbs provided. Running Merqury in trio mode... hap1: pat.meryl hap2: mat.meryl asm1: assembly_01.fasta asm2: assembly_02.fasta out : output_05 Get spectra-cn plots and QV stats Get blob plots Get haplotype specfic spectra-cn plots Get phase blocks Get block N plots No modules available.. # Generate assembly_01.fasta.fai *** # Found assembly_01.gaps.bed *** # No gaps found. This is a contig set. # Generate assembly_02.fasta.fai *** # Found assembly_02.gaps.bed *** # No gaps found. This is a contig set. # Convert output_05.assembly_01.100_20000.phased_block.bed to sizes Result saved as output_05.assembly_01.100_20000.phased_block.sizes # Plot output_05.assembly_01.100_20000.phased_block.bed Rscript /home/laptop/miniconda3/envs/mulled-v1-df114ce4641e6c1c408ddc8230d91a93fc95c8ba1dfeff221f556e667abb43c0/share/merqury/plot/plot_block_N.R -b output_05.assembly_01.100_20000.phased_block.sizes -c output_05.assembly_01.contig.sizes -o output_05.assembly_01 Loading required package: argparse Loading required package: ggplot2 Loading required package: scales Error in read.table(dat, header = F) : no lines available in input Calls: block_n -> attach_n -> read.table Execution halted # Convert output_05.assembly_02.100_20000.phased_block.bed to sizes Result saved as output_05.assembly_02.100_20000.phased_block.sizes # Plot output_05.assembly_02.100_20000.phased_block.bed Rscript /home/laptop/miniconda3/envs/mulled-v1-df114ce4641e6c1c408ddc8230d91a93fc95c8ba1dfeff221f556e667abb43c0/share/merqury/plot/plot_block_N.R -b output_05.assembly_02.100_20000.phased_block.sizes -c output_05.assembly_02.contig.sizes -o output_05.assembly_02 Loading required package: argparse Loading required package: ggplot2 Loading required package: scales Error in read.table(dat, header = F) : no lines available in input Calls: block_n -> attach_n -> read.table Execution halted