diff macros.xml @ 0:f4ab1b067529 draft

planemo upload for repository https://github.com/thegenemyers/MERQURY.FK commit a3bca7925574e058336e55d80e8390e95af770a7

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Tue Feb 25 13:35:13 2025 +0000
@@ -0,0 +1,82 @@
+<macros>
+    <token name="@VERSION@">1.1.1</token>
+    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@PLOTS@">
+        -w${width}
+        -h${height}
+    </token>
+    <token name="@MEASURE@">
+        #if $measure.measurement == "relative":
+            -x${max_x}
+            -y${max_y}
+        #else:
+            -X${max_x}
+            -Y${max_y} 
+        #end if 
+    </token>
+    <token name="@GRAPHS@">
+        #for $graph in $graphs:
+            $graph
+        #end for
+    </token>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@VERSION@">merquryfk</requirement>
+        </requirements>
+    </xml>
+    <xml name="sizes">
+        <conditional name="measure">
+            <param name="measurement" type="select" label="How would you like to set max value?">
+                <option value="absolute">Absolute terms</option>
+                <option value="relative">Relative to peak</option>
+            </param>
+            <when value="absolute">
+                <param name="max_x" type="integer" min="0" label="Max X value" optional="true" value="2"/>
+                <param name="max_y" type="integer" min="0" label="Max Y value" optional="true" value="1"/>
+            </when>            
+            <when value="relative">
+                <param name="max_x" type="float" min="0" label="Max X multiplier" optional="true" value="2.1" help="Sets max value as assigned multiple of count 'peak' away from origin"/>
+                <param name="max_y" type="float" min="0" label="Max Y multiplier" optional="true" value="1.1" help="Sets max value as assigned multiple of count 'peak' away from origin"/>
+            </when>
+        </conditional>
+    </xml>
+    <xml name="plots">
+        <param name="width" label="Width of plots" type="float" optional="true" value="6.0" min="0"/>
+        <param name="height" label="Height of plots" type="float" optional="true" value="4.5" min="0"/>
+    </xml>
+    <xml name="graphs">
+        <param name="graphs" label="What graphs would you like to generate?" type="select" multiple="true" help="If none are selected, all will be generated">
+            <option value="-l">Line plot</option>
+            <option value="-f">Fill plot</option>
+            <option value="-s">Stack plot</option>
+            <option value="-z">K-mer counts unique to assembly</option>
+        </param>
+    </xml>
+    <xml name="graphs2">
+        <param name="graphs" label="What graphs would you like to generate?" type="select" multiple="true" help="If none are selected, all will be generated">
+            <option value="-l">Line plot</option>
+            <option value="-f">Fill plot</option>
+            <option value="-s">Stack plot</option>
+        </param>
+    </xml>
+    <xml name="pdf">
+        <param argument="-pdf" type="boolean" label="PDF Output" truevalue="-pdf" falsevalue="" help="Output in pdf format if true, png if false"/>
+    </xml>
+    <xml name="description">
+        <description>part of MERQURY.FK</description>
+    </xml>
+    <xml name="citation">
+        <citations>
+            <citation type="bibtex">
+                @misc{githubMERQURY.FK.
+                    author = {Eugene Myers},
+                    year = {2023},
+                    title = {MERQURY.FK},
+                    publisher = {GitHub},
+                    journal = {GitHub repository},
+                    url = {https://github.com/thegenemyers/MERQURY.FK},
+                }
+            </citation>
+        </citations>
+    </xml>
+</macros>
\ No newline at end of file