Mercurial > repos > iuc > metabat2_jgi_summarize_bam_contig_depths
changeset 2:a4441f35f17b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metabat2/ commit 625074b4bfdb2039935d0cb27115f83f18dae0d6
| author | iuc |
|---|---|
| date | Tue, 02 Aug 2022 09:40:30 +0000 |
| parents | 1592150e38d2 |
| children | ec045ca00b50 |
| files | jgi_summarize_bam_contig_depths.xml macros.xml test-data/process_log.txt |
| diffstat | 3 files changed, 1 insertions(+), 5 deletions(-) [+] |
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--- a/jgi_summarize_bam_contig_depths.xml Fri Jul 29 12:37:53 2022 +0000 +++ b/jgi_summarize_bam_contig_depths.xml Tue Aug 02 09:40:30 2022 +0000 @@ -122,7 +122,6 @@ <param argument="--weightMapQual" type="float" value="0.0" label="Weight per-base depth based on the MQ of the read" help="Zero value disables"/> <param argument="--includeEdgeBases" type="boolean" truevalue="--includeEdgeBases" falsevalue="" checked="false" label="Include 1-readlength edges when calculating depth and variance?"/> <param argument="--maxEdgeBases" type="integer" value="75" label="Maximum length when calculating depth and variance" help="Ignored when including 1-readlength edges when calculating depth and variance"/> - </section> <section name="shredding" title="Options to control shredding contigs that are under-represented by the reads"> <param argument="--shredLength" type="integer" value="16000" label="Maximum length of the shreds"/>
--- a/macros.xml Fri Jul 29 12:37:53 2022 +0000 +++ b/macros.xml Tue Aug 02 09:40:30 2022 +0000 @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">2.15</token> - <token name="@VERSION_SUFFIX@">1</token> + <token name="@VERSION_SUFFIX@">2</token> <token name="@PROFILE@">21.01</token> <xml name="requirements"> <requirements>
--- a/test-data/process_log.txt Fri Jul 29 12:37:53 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,3 +0,0 @@ -MetaBAT 2 (2.15 (Bioconda)) using minContig 1500, minCV 1.0, minCVSum 1.0, maxP 95%, minS 60, maxEdges 200 and minClsSize 200000. with random seed=345678 -No edges were formed by TNF. -0 bins (0 bases in total) formed.