comparison metaeuk_easy_predict.xml @ 1:f91548912113 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaeuk commit 36466f52394655b92d07a3a26ec3259bd30b89a2"

0:5f6ebc3103ee

<tool id="metaeuk_easy_predict" name="MetaEuk Easy Predict" version="@TOOL_VERSION@+galaxy0">
    <description>High-throughput gene discovery and annotation for large-scale eukaryotic metagenomics</description>
    <macros>
        <token name="@TOOL_VERSION@">2.ddf2742</token>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">metaeuk</requirement>
    </requirements>
    <command detect_errors="aggressive"><![CDATA[

            --metaeuk-tcov '${metaeuk_tcov}'
        #if $adv.adv_options == "yes"
            --max-intron '${adv.max_intron}'
            --min-intron '${adv.min_intron}'
        #end if
        && mv output.fasta '$output'
    ]]></command>
    <inputs>
        <param name="contigs" type="data" format="fasta" label="Contigs to search again" />
        <param name="query" type="data" format="fasta" label="Proteins to search against contigs" />
        <param argument="-e" name="segment_eval" type="float" value="100" label="Maximum e-value of individual match segment" />

1:f91548912113

<tool id="metaeuk_easy_predict" name="MetaEuk Easy Predict" version="@TOOL_VERSION@+galaxy0">
    <description>High-throughput gene discovery and annotation for large-scale eukaryotic metagenomics</description>
    <macros>
        <token name="@TOOL_VERSION@">4.a0f584d</token>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">metaeuk</requirement>
    </requirements>
    <command detect_errors="aggressive"><![CDATA[

            --metaeuk-tcov '${metaeuk_tcov}'
        #if $adv.adv_options == "yes"
            --max-intron '${adv.max_intron}'
            --min-intron '${adv.min_intron}'
        #end if
        && mv output.fasta.codon.fas '$output'
    ]]></command>
    <inputs>
        <param name="contigs" type="data" format="fasta" label="Contigs to search again" />
        <param name="query" type="data" format="fasta" label="Proteins to search against contigs" />
        <param argument="-e" name="segment_eval" type="float" value="100" label="Maximum e-value of individual match segment" />