Mercurial > repos > iuc > metaeuk_easy_predict
comparison metaeuk_easy_predict.xml @ 1:f91548912113 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaeuk commit 36466f52394655b92d07a3a26ec3259bd30b89a2"
author | iuc |
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date | Sun, 18 Jul 2021 17:41:54 +0000 |
parents | 5f6ebc3103ee |
children | be6bbdeafcb8 |
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0:5f6ebc3103ee | 1:f91548912113 |
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1 <tool id="metaeuk_easy_predict" name="MetaEuk Easy Predict" version="@TOOL_VERSION@+galaxy0"> | 1 <tool id="metaeuk_easy_predict" name="MetaEuk Easy Predict" version="@TOOL_VERSION@+galaxy0"> |
2 <description>High-throughput gene discovery and annotation for large-scale eukaryotic metagenomics</description> | 2 <description>High-throughput gene discovery and annotation for large-scale eukaryotic metagenomics</description> |
3 <macros> | 3 <macros> |
4 <token name="@TOOL_VERSION@">2.ddf2742</token> | 4 <token name="@TOOL_VERSION@">4.a0f584d</token> |
5 </macros> | 5 </macros> |
6 <requirements> | 6 <requirements> |
7 <requirement type="package" version="@TOOL_VERSION@">metaeuk</requirement> | 7 <requirement type="package" version="@TOOL_VERSION@">metaeuk</requirement> |
8 </requirements> | 8 </requirements> |
9 <command detect_errors="aggressive"><![CDATA[ | 9 <command detect_errors="aggressive"><![CDATA[ |
20 --metaeuk-tcov '${metaeuk_tcov}' | 20 --metaeuk-tcov '${metaeuk_tcov}' |
21 #if $adv.adv_options == "yes" | 21 #if $adv.adv_options == "yes" |
22 --max-intron '${adv.max_intron}' | 22 --max-intron '${adv.max_intron}' |
23 --min-intron '${adv.min_intron}' | 23 --min-intron '${adv.min_intron}' |
24 #end if | 24 #end if |
25 && mv output.fasta '$output' | 25 && mv output.fasta.codon.fas '$output' |
26 ]]></command> | 26 ]]></command> |
27 <inputs> | 27 <inputs> |
28 <param name="contigs" type="data" format="fasta" label="Contigs to search again" /> | 28 <param name="contigs" type="data" format="fasta" label="Contigs to search again" /> |
29 <param name="query" type="data" format="fasta" label="Proteins to search against contigs" /> | 29 <param name="query" type="data" format="fasta" label="Proteins to search against contigs" /> |
30 <param argument="-e" name="segment_eval" type="float" value="100" label="Maximum e-value of individual match segment" /> | 30 <param argument="-e" name="segment_eval" type="float" value="100" label="Maximum e-value of individual match segment" /> |