comparison formatoutput.py @ 2:a92a632c4d9b draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit f1c6f4fe1e572ace84cf9106bc253603f55aac55"

1:b89b0765695d

            # parse metaphlan file
            for line in metaphlan_output_f.readlines():
                # skip headers
                if line.startswith("#"):
                    continue

                # spit lines
                split_line = line[:-1].split('\t')
                taxo_n = split_line[0].split('|')
                if legacy_output:
                    abundance = split_line[1]

2:a92a632c4d9b

            # parse metaphlan file
            for line in metaphlan_output_f.readlines():
                # skip headers
                if line.startswith("#"):
                    continue
                # skip UNKNOWN lines in Predicted taxon relative abundances
                if "UNKNOWN" in line:
                    continue
                # spit lines
                split_line = line[:-1].split('\t')
                taxo_n = split_line[0].split('|')
                if legacy_output:
                    abundance = split_line[1]