Mercurial > repos > iuc > metaphlan

diff test-data/SRS014464-Anterior_nares-abundances.tabular @ 4:a16313517e55 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 2cec4cbdc43f84720af3e22eb008e9788481ce00"
author iuc
date Wed, 02 Feb 2022 22:03:11 +0000
parents f5df500fcc3c
children
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--- a/test-data/SRS014464-Anterior_nares-abundances.tabular	Fri Sep 24 07:23:52 2021 +0000
+++ b/test-data/SRS014464-Anterior_nares-abundances.tabular	Wed Feb 02 22:03:11 2022 +0000
@@ -1,4 +1,5 @@
 #custom_db
+#mpa_v21_CHOCOPhlAnxxx_2
 #/home/bebatut/miniconda3/envs/mulled-v1-b4915a464cf72db4053ec566c65e3f5f431691323f08f9b6b1c9ecfc4f8b9c88/bin/metaphlan in --input_type fasta --read_min_len 70 --bowtie2db ref_db/ --index custom_db --bt2_ps very-sensitive --min_mapq_val 5 -t rel_ab --tax_lev a --min_cu_len 2000 --add_viruses --stat_q 0.2 --perc_nonzero 0.33 --avoid_disqm --sample_id_key SampleID --sample_id Metaphlan_Analysis -o /tmp/tmptu3575j7/files/000/dataset_19.dat --bowtie2out bowtie2out -s /tmp/tmptu3575j7/files/000/dataset_21.dat --biom /tmp/tmptu3575j7/files/000/dataset_22.dat --nproc 1
 #SampleID	Metaphlan_Analysis
 #clade_name	NCBI_tax_id	relative_abundance	additional_species