# HG changeset patch
# User iuc
# Date 1726863278 0
# Node ID 740fd2d16a28741174f9dcc6ada10aacc181c8fe
# Parent  ef65b083bd0cf8daa1ec19b59f32ca97d84b5b4d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 081635c7e118b90aae323f8e41530a1d827e4860

diff -r ef65b083bd0c -r 740fd2d16a28 metaphlan.xml
--- a/metaphlan.xml	Sun Sep 08 06:59:00 2024 +0000
+++ b/metaphlan.xml	Fri Sep 20 20:14:38 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="metaphlan" name="MetaPhlAn" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@">
+<tool id="metaphlan" name="MetaPhlAn" version="@TOOL_VERSION@+galaxy3" profile="@PROFILE@">
     <description>to profile the composition of microbial communities</description>
     <macros>
         <import>macros.xml</import>
@@ -77,7 +77,7 @@
         #else if $full_ext.endswith("bz2")
             bzcat '$inputs.in.raw_in.in_f' > 'in_f' && 
             bzcat '$inputs.in.raw_in.in_r' > 'in_r' &&
-            #set file_path="-1 in_f -2 in_r"
+        #else:
             ln -s '$inputs.in.raw_in.in_f' 'in_f' &&
             ln -s '$inputs.in.raw_in.in_r' 'in_r' &&
         #end if