annotate test-data/test_out_of_frame.out @ 0:b2f1cf977ca9 draft

planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa

read.header	cdr3nt	cdr3aa	cdr.insert.qual	mutations.qual	v.segment	d.segment	j.segment	cdr1.start.in.read	cdr1.end.in.read	cdr2.start.in.read	cdr2.end.in.read	cdr3.start.in.read	cdr3.end.in.read	v.end.in.cdr3	d.start.in.cdr3	d.end.in.cdr3	j.start.in.cdr3	v.del	d.del.5	d.del.3	j.del	mutations.nt.FR1	mutations.nt.CDR1	mutations.nt.FR2	mutations.nt.CDR2	mutations.nt.FR3	mutations.nt.CDR3	mutations.nt.FR4	rc	complete	has.cdr3	in.frame	no.stop	mutations.aa.FR1	mutations.aa.CDR1	mutations.aa.FR2	mutations.aa.CDR2	mutations.aa.FR3	mutations.aa.CDR3	mutations.aa.FR4	pol.v	pol.d.5	pol.d.3	pol.j	canonical	contignt
>CGTTCAGTTCTTTTGCG|PRCONS=Human-IGHD|SEQORIENT=F|CREGION=Human-IGHD-InternalC|CONSCOUNT=1|DUPCOUNT=1	TGTGCGCCGGCTTGTGGTGGTGATTGCTATAGGACAACTGGTTCGACCCCTGG	CAPACGGDtg?L*DNWFDPW	IIIIIIII	IIIIIIIIIII	IGHV7-4-1*01	IGHD2-21*01	IGHJ5*01	174	198	249	273	384	437	6	11	30	33	3	6	3	0	S7:A>G,S18:T>G,S26:T>G,S49:C>A,S54:A>T,S58:T>G,S69:G>C	S94:A>C	S115:A>C			S332:T>C	S343:A>G	false	true	true	false	false	S2:Q>R,S6:S>A,S8:S>S,S16:S>*,S18:K>*,S19:V>G,S23:A>P	S31:Y>S	S38:Q>P			S110:T>T	S114:K>R	-1	-1	-1	-1	true	CAGGTGCGGCTGGTGCAAGCTGGGTCGGAGTTGAAGAAGCCTGGGGCCTAAGTGTAGGGTTCCTGCAAGCCTTCTGGATACACCTTCACTAGCTCTGCTATGAATTGGGTGCGACCGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACACCAACACTGGGAACCCAACGTATGCCCAGGGCTTCACAGGACGGTTTGTCTTCTCCTTGGACACCTCTGTCAGCACGGCATATCTGCAGATCTGCAGCCTAAAGGCTGAGGACACTGCCGTGTATTACTGTGCGCCGGCTTGTGGTGGTGATTGCTATAGGACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGCACCCACCAAGGCTCCGGATGTGTTCC