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comparison migmap.xml @ 2:6ad9d48a512e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/migmap commit 60e2302cfac90d0c909ef61815aaaafaaad5816a
author iuc
date Mon, 17 Jun 2019 07:53:12 -0400
parents fbbe507e692b
children 587fa797ede9
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1:fbbe507e692b 2:6ad9d48a512e
4 <requirements> 4 <requirements>
5 <requirement type="package" version="1.0.2">migmap</requirement> 5 <requirement type="package" version="1.0.2">migmap</requirement>
6 </requirements> 6 </requirements>
7 <command detect_errors='exit_code'><![CDATA[ 7 <command detect_errors='exit_code'><![CDATA[
8 export IGBLAST_PATH=\$(dirname \$(which igblastn)) && 8 export IGBLAST_PATH=\$(dirname \$(which igblastn)) &&
9 mkdir temp_db && 9 mkdir -p temp_db/igblast &&
10 ln -s "\${IGBLAST_PATH}/../share/igblast/" ./temp_db/ && 10 ln -s "\${IGBLAST_PATH}/../share/igblast/bin/" ./temp_db/igblast &&
11 ln -s "\${IGBLAST_PATH}/../share/igblast/internal_data/" ./temp_db/igblast &&
12 ln -s "\${IGBLAST_PATH}/../share/igblast/optional_file/" ./temp_db/igblast &&
11 13
12 #if $input.is_of_type('fasta') : 14 #if $input.is_of_type('fasta') :
13 ln -s '$input' in.fa && 15 ln -s '$input' in.fa &&
14 #else 16 #else
15 ln -s '$input' in.fq && 17 ln -s '$input' in.fq &&