view test-data/test_out_of_frame.out @ 4:29ec7b3a458b draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/migmap commit e32ce67ab5bbb46569f220489b72ecc11b7a0fd3"

read.header	cdr3nt	cdr3aa	cdr.insert.qual	mutations.qual	v.segment	d.segment	j.segment	cdr1.start.in.read	cdr1.end.in.read	cdr2.start.in.read	cdr2.end.in.read	cdr3.start.in.read	cdr3.end.in.read	v.end.in.cdr3	d.start.in.cdr3	d.end.in.cdr3	j.start.in.cdr3	v.del	d.del.5	d.del.3	j.del	mutations.nt.FR1	mutations.nt.CDR1	mutations.nt.FR2	mutations.nt.CDR2	mutations.nt.FR3	mutations.nt.CDR3	mutations.nt.FR4	rc	complete	has.cdr3	in.frame	no.stop	mutations.aa.FR1	mutations.aa.CDR1	mutations.aa.FR2	mutations.aa.CDR2	mutations.aa.FR3	mutations.aa.CDR3	mutations.aa.FR4	pol.v	pol.d.5	pol.d.3	pol.j	canonical	contignt
>CGTTCAGTTCTTTTGCG|PRCONS=Human-IGHD|SEQORIENT=F|CREGION=Human-IGHD-InternalC|CONSCOUNT=1|DUPCOUNT=1	TGTGCGCCGGCTTGTGGTGGTGATTGCTATAGGACAACTGGTTCGACCCCTGG	CAPACGGDtg?L*DNWFDPW	IIIIIIII	IIIIIIIIIII	IGHV7-4-1*01	IGHD2-21*01	IGHJ5*01	174	198	249	273	384	437	6	11	30	33	3	6	3	0	S7:A>G,S18:T>G,S26:T>G,S49:C>A,S54:A>T,S58:T>G,S69:G>C	S94:A>C	S115:A>C			S332:T>C	S343:A>G	false	true	true	false	false	S2:Q>R,S6:S>A,S8:S>S,S16:S>*,S18:K>*,S19:V>G,S23:A>P	S31:Y>S	S38:Q>P			S110:T>T	S114:K>R	-1	-1	-1	-1	true	CAGGTGCGGCTGGTGCAAGCTGGGTCGGAGTTGAAGAAGCCTGGGGCCTAAGTGTAGGGTTCCTGCAAGCCTTCTGGATACACCTTCACTAGCTCTGCTATGAATTGGGTGCGACCGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACACCAACACTGGGAACCCAACGTATGCCCAGGGCTTCACAGGACGGTTTGTCTTCTCCTTGGACACCTCTGTCAGCACGGCATATCTGCAGATCTGCAGCCTAAAGGCTGAGGACACTGCCGTGTATTACTGTGCGCCGGCTTGTGGTGGTGATTGCTATAGGACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGCACCCACCAAGGCTCCGGATGTGTTCC