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comparison miniasm.xml @ 5:80d1250bd5fd draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/miniasm commit 8b64dd57d6b732e97693d068ebf9d3fb9f25fc8c"
author iuc
date Sat, 23 Oct 2021 21:50:09 +0000
parents a7b889b90140
children b799a615995d
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4:a7b889b90140 5:80d1250bd5fd
1 <tool id="miniasm" name="miniasm" version="@TOOL_VERSION@+galaxy0"> 1 <tool id="miniasm" name="miniasm" version="@TOOL_VERSION@+galaxy1" profile="20.05">
2 <description>Ultrafast de novo assembly for long noisy reads </description> 2 <description>Ultrafast de novo assembly for long noisy reads </description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">0.3_r179</token> 4 <token name="@TOOL_VERSION@">0.3_r179</token>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
24 -F '$graph.finalDropRatio' 24 -F '$graph.finalDropRatio'
25 '$paf' > '$gfa' 25 '$paf' > '$gfa'
26 ]]></command> 26 ]]></command>
27 <inputs> 27 <inputs>
28 <param name="readFile" type="data" format="fastq,fastq.gz,fasta,fasta.gz" label="Sequence Reads" /> 28 <param name="readFile" type="data" format="fastq,fastq.gz,fasta,fasta.gz" label="Sequence Reads" />
29 <param name="paf" type="data" format="tabular" label="PAF file" help="Pairwise mapping format" /> 29 <param name="paf" type="data" format="paf" label="PAF file" help="Pairwise mapping format" />
30 <section name="preselection" title="Preselection options"> 30 <section name="preselection" title="Preselection options">
31 <param argument="-m" name="minMatch" type="integer" value="100" label="Drop mappings having less than this number of matching bases" 31 <param argument="-m" name="minMatch" type="integer" value="100" label="Drop mappings having less than this number of matching bases"
32 help="column 10 in PAF"/> 32 help="column 10 in PAF"/>
33 <param argument="-i" name="minIden" type="float" value="0.05" label="During read filtering, ignore mappings with col10/col11 below this value" 33 <param argument="-i" name="minIden" type="float" value="0.05" label="During read filtering, ignore mappings with col10/col11 below this value"
34 help="Ignored mappings are still used for read overlaps" /> 34 help="Ignored mappings are still used for read overlaps" />