diff macros.xml @ 12:037c6e54df11 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 3617059cec3cc200dc22450347c070c4207b8852"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Fri May 28 21:09:55 2021 +0000
@@ -0,0 +1,40 @@
+<macros>
+    <token name="@TOOL_VERSION@">2.20</token>
+    <token name="@GALAXY_TOOL_VERSION@">galaxy0</token>
+    <xml name="edam_ontology">
+        <edam_topics>                                                                                  
+            <edam_topic>topic_0102</edam_topic>
+        </edam_topics>
+        <edam_operations>
+            <edam_operation>operation_0292</edam_operation>
+        </edam_operations>
+    </xml>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">minimap2</requirement>
+            <requirement type="package" version="1.12">samtools</requirement>
+        </requirements>
+    </xml>
+    <xml name="pe_anaylsis_fixed_selector">
+        <param name="analysis_type_selector" type="select"
+        label="Presets for PE reads alignment"
+        help="These are the minimap2 preset options for PE alignment of short reads. You can customize these and other settings in the indexing, mapping and alignment options sections below.">
+            <option value="sr">Short reads without splicing (-k21 -w11 --sr -F800 -A2 -B8 -O12,32 -E2,1 -r50 -p.5 -N20 -f1000,5000 -n2 -m20 -s40 -g200 -2K50m --heap-sort=yes --secondary=no) (sr)</option>
+        </param>
+    </xml>
+    <xml name="citations">
+        <citations>
+            <citations>
+                <citation type="doi">10.1093/bioinformatics/btp324</citation>
+                <citation type="doi">10.1093/bioinformatics/btp698</citation>
+                <citation type="bibtex">@misc{1303.3997,
+                    Author = {Heng Li},
+                    Title = {Minimap2: fast pairwise alignment for long nucleotide sequences},
+                    Year = {2017},
+                    Eprint = {arXiv:1708.01492},
+                    url = {https://arxiv.org/abs/1708.01492},
+                    }</citation>
+            </citations>
+        </citations>
+    </xml>
+</macros>
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