# HG changeset patch
# User iuc
# Date 1510177729 18000
# Node ID 4070f129540ae2d17b9001229f9856b682c33b09
# Parent  b103bc946f573df72e43ebb1d58e27061f96560e
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 79e4c4d7182a4d3f7b6d9a7e444a2bb34be588c0

diff -r b103bc946f57 -r 4070f129540a minimap2.xml
--- a/minimap2.xml	Wed Nov 08 10:02:24 2017 -0500
+++ b/minimap2.xml	Wed Nov 08 16:48:49 2017 -0500
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="minimap2" name="Map with minimap2" version="2.4" profile="17.01">
+<tool id="minimap2" name="Map with minimap2" version="2.4.1" profile="17.01">
     <description>A fast pairwise aligner for genomic and spliced nucleotide sequences</description>
     <requirements>
         <requirement type="package" version="2.4">minimap2</requirement>
@@ -106,6 +106,7 @@
     -O $io_options.output_format
     #if $io_options.output_format == 'CRAM':
         --reference reference.fa
+        --output-fmt-option no_ref
     #end if
     -o '$alignment_output'
 ]]>