Mercurial > repos > iuc > minimap2
changeset 3:1650a97189be draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 1672eb3642d19c8502322115b86846297cd5a6b0
| author | iuc |
|---|---|
| date | Fri, 17 Nov 2017 08:11:42 -0500 |
| parents | 4070f129540a |
| children | 6f50f36e4481 |
| files | minimap2.xml test-data/minimap2-test1-fasta.bam test-data/minimap2-test1-fasta.cram test-data/minimap2-test1.bam test-data/minimap2-test2.bam |
| diffstat | 5 files changed, 4 insertions(+), 2 deletions(-) [+] |
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--- a/minimap2.xml Wed Nov 08 16:48:49 2017 -0500 +++ b/minimap2.xml Fri Nov 17 08:11:42 2017 -0500 @@ -1,8 +1,8 @@ <?xml version="1.0"?> -<tool id="minimap2" name="Map with minimap2" version="2.4.1" profile="17.01"> +<tool id="minimap2" name="Map with minimap2" version="2.5" profile="17.01"> <description>A fast pairwise aligner for genomic and spliced nucleotide sequences</description> <requirements> - <requirement type="package" version="2.4">minimap2</requirement> + <requirement type="package" version="2.5">minimap2</requirement> <requirement type="package" version="1.6">samtools</requirement> </requirements> <version_command>minimap2 --version</version_command> @@ -89,6 +89,7 @@ #if $io_options.cs: --cs $io_options.cs #end if + $io_options.Y #if $io_options.K: -K $io_options.K #end if @@ -211,6 +212,7 @@ <option value="short">short</option> <option value="long">long</option> </param> + <param argument="-Y" type="boolean" truevalue="-Y" falsevalue="" label="use soft clipping for supplementary alignments ?"/> </section> </inputs> <outputs>