Mercurial > repos > iuc > minimap2
changeset 10:77b2770508f6 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit d7c1c96bd5297839271cf69ad2129a0f47a29b89"
| author | iuc |
|---|---|
| date | Thu, 11 Feb 2021 19:10:41 +0000 |
| parents | 8c6cd2650d1f |
| children | f54f5baedfdd |
| files | minimap2.xml |
| diffstat | 1 files changed, 3 insertions(+), 2 deletions(-) [+] |
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--- a/minimap2.xml Thu Jun 04 22:29:50 2020 -0400 +++ b/minimap2.xml Thu Feb 11 19:10:41 2021 +0000 @@ -1,5 +1,5 @@ <?xml version="1.0"?> -<tool id="minimap2" name="Map with minimap2" version="@TOOL_VERSION@+galaxy2" profile="17.01"> +<tool id="minimap2" name="Map with minimap2" version="@TOOL_VERSION@+galaxy3" profile="17.01"> <description>A fast pairwise aligner for genomic and spliced nucleotide sequences</description> <macros> <token name="@TOOL_VERSION@">2.17</token> @@ -51,7 +51,7 @@ -f $mapping_options.f #end if #if str($mapping_options.min_occ_floor): - --min-occ-floor $min_occ_floor + --min-occ-floor $mapping_options.min_occ_floor #end if #if str($mapping_options.g): -g $mapping_options.g @@ -440,6 +440,7 @@ <test> <!-- test alignment options --> <param name="reference_source_selector" value="cached" /> + <param name="min_occ_floor" value="1000"/> <param name="ref_file" value="bwa-mem-mt-genome"/> <param name="fastq_input_selector" value="single"/> <param name="fastq_input1" ftype="fastqsanger" value="bwa-mem-fasta1.fa"/>