# HG changeset patch # User iuc # Date 1689241076 0 # Node ID 52bdc302299ba4d4b280e636c956637c767e8b91 # Parent d518cf04b55c11a6c65c371ae7a896dc4a5dc6b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/miniprot commit 7686c033edb974379f855d2563149d56920f063e diff -r d518cf04b55c -r 52bdc302299b macros.xml --- a/macros.xml Thu Apr 06 09:20:48 2023 +0000 +++ b/macros.xml Thu Jul 13 09:37:56 2023 +0000 @@ -1,5 +1,5 @@ - 0.10 + 0.12 10.1093/bioinformatics/btad014 diff -r d518cf04b55c -r 52bdc302299b miniprot.xml --- a/miniprot.xml Thu Apr 06 09:20:48 2023 +0000 +++ b/miniprot.xml Thu Jul 13 09:37:56 2023 +0000 @@ -30,7 +30,7 @@ #if str($adv.mapping.intron_size.mode) == 'manual' -G $adv.mapping.intron_size.max_intron #elif str($adv.mapping.intron_size.mode) == 'auto' - -I + -I #end if #if str($adv.output.prefix) != 'MP' @@ -40,6 +40,8 @@ --outn=$adv.output.outputs_per_query --outc=$adv.output.output_fraction_query --outs=$adv.output.output_score_least + $adv.output.output_translated_protein + $adv.output.output_no_cs $adv.output.output_residue_alignment #end if #if str($db.dbtype) == 'fasta' @@ -58,6 +60,7 @@ #end if '$protein_fasta' > '$output_alignment' ]]> + @@ -65,19 +68,19 @@ - - - - - + + + + + - + - - + + @@ -89,34 +92,34 @@
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