Mercurial > repos > iuc > mitos

comparison test-data/mitos2_NC_012920.gff @ 4:c7553ba39670 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mitos commit 5eec533bf2834c3a35cc248acd6e24635c619484
author iuc
date Wed, 01 Mar 2023 22:40:00 +0000
parents 39b6485e2d34
children ca1142e5df8b
comparison
equal deleted inserted replaced
3:f20804c311de 4:c7553ba39670
1 NC_012920 mitfi ncRNA_gene 577 647 . + . ID=gene_trnF;gene_id=trnF 1 NC_012920\tmitfi\tncRNA_gene\t577\t647\t\.\t\+\t\.\tID=gene_trnF;gene_id=trnF
2 NC_012920 mitfi tRNA 577 647 . + . ID=transcript_trnF;Parent=gene_trnF;gene_id=trnF 2 NC_012920\tmitfi\ttRNA\t577\t647\t\.\t\+\t\.\tID=transcript_trnF;Parent=gene_trnF;gene_id=trnF
3 NC_012920 mitfi exon 577 647 9.99999974738e-06 + . Parent=transcript_trnF;Name=trnF 3 NC_012920\tmitfi\texon\t577\t647\t[-0-9.e]+\t\+\t\.\tParent=transcript_trnF;Name=trnF
4 NC_012920 mitfi ncRNA_gene 648 1601 . + . ID=gene_rrnS;gene_id=rrnS 4 NC_012920\tmitfi\tncRNA_gene\t648\t1601\t\.\t\+\t\.\tID=gene_rrnS;gene_id=rrnS
5 NC_012920 mitfi rRNA 648 1601 . + . ID=transcript_rrnS;Parent=gene_rrnS;gene_id=rrnS 5 NC_012920\tmitfi\trRNA\t648\t1601\t\.\t\+\t\.\tID=transcript_rrnS;Parent=gene_rrnS;gene_id=rrnS
6 NC_012920 mitfi exon 648 1601 0.0 + . Parent=transcript_rrnS;Name=rrnS 6 NC_012920\tmitfi\texon\t648\t1601\t0\.0\t\+\t\.\tParent=transcript_rrnS;Name=rrnS
7 NC_012920 mitfi ncRNA_gene 3230 3304 . + . ID=gene_trnL2;gene_id=trnL2 7 NC_012920\tmitfi\tncRNA_gene\t3230\t3304\t\.\t\+\t\.\tID=gene_trnL2;gene_id=trnL2
8 NC_012920 mitfi tRNA 3230 3304 . + . ID=transcript_trnL2;Parent=gene_trnL2;gene_id=trnL2 8 NC_012920\tmitfi\ttRNA\t3230\t3304\t\.\t\+\t\.\tID=transcript_trnL2;Parent=gene_trnL2;gene_id=trnL2
9 NC_012920 mitfi exon 3230 3304 2.10000007428e-06 + . Parent=transcript_trnL2;Name=trnL2 9 NC_012920\tmitfi\texon\t3230\t3304\t[-0-9.e]+\t\+\t\.\tParent=transcript_trnL2;Name=trnL2
10 NC_012920 mitfi ncRNA_gene 4263 4331 . + . ID=gene_trnI;gene_id=trnI 10 NC_012920\tmitfi\tncRNA_gene\t4263\t4331\t\.\t\+\t\.\tID=gene_trnI;gene_id=trnI
11 NC_012920 mitfi tRNA 4263 4331 . + . ID=transcript_trnI;Parent=gene_trnI;gene_id=trnI 11 NC_012920\tmitfi\ttRNA\t4263\t4331\t\.\t\+\t\.\tID=transcript_trnI;Parent=gene_trnI;gene_id=trnI
12 NC_012920 mitfi exon 4263 4331 6.00000021223e-07 + . Parent=transcript_trnI;Name=trnI 12 NC_012920\tmitfi\texon\t4263\t4331\t[-0-9.e]+\t\+\t\.\tParent=transcript_trnI;Name=trnI
13 NC_012920 mitfi ncRNA_gene 4402 4469 . + . ID=gene_trnM;gene_id=trnM 13 NC_012920\tmitfi\tncRNA_gene\t4402\t4469\t\.\t\+\t\.\tID=gene_trnM;gene_id=trnM
14 NC_012920 mitfi tRNA 4402 4469 . + . ID=transcript_trnM;Parent=gene_trnM;gene_id=trnM 14 NC_012920\tmitfi\ttRNA\t4402\t4469\t\.\t\+\t\.\tID=transcript_trnM;Parent=gene_trnM;gene_id=trnM
15 NC_012920 mitfi exon 4402 4469 0.00340000004508 + . Parent=transcript_trnM;Name=trnM 15 NC_012920\tmitfi\texon\t4402\t4469\t[-0-9.e]+\t\+\t\.\tParent=transcript_trnM;Name=trnM
16 NC_012920 mitfi ncRNA_gene 5587 5655 . - . ID=gene_trnA;gene_id=trnA 16 NC_012920\tmitfi\tncRNA_gene\t5587\t5655\t\.\t-\t\.\tID=gene_trnA;gene_id=trnA
17 NC_012920 mitfi tRNA 5587 5655 . - . ID=transcript_trnA;Parent=gene_trnA;gene_id=trnA 17 NC_012920\tmitfi\ttRNA\t5587\t5655\t\.\t-\t\.\tID=transcript_trnA;Parent=gene_trnA;gene_id=trnA
18 NC_012920 mitfi exon 5587 5655 0.00179999996908 - . Parent=transcript_trnA;Name=trnA 18 NC_012920\tmitfi\texon\t5587\t5655\t[-0-9.e]+\t-\t\.\tParent=transcript_trnA;Name=trnA
19 NC_012920 mitfi ncRNA_gene 5657 5729 . - . ID=gene_trnN;gene_id=trnN 19 NC_012920\tmitfi\tncRNA_gene\t5657\t5729\t\.\t-\t\.\tID=gene_trnN;gene_id=trnN
20 NC_012920 mitfi tRNA 5657 5729 . - . ID=transcript_trnN;Parent=gene_trnN;gene_id=trnN 20 NC_012920\tmitfi\ttRNA\t5657\t5729\t\.\t-\t\.\tID=transcript_trnN;Parent=gene_trnN;gene_id=trnN
21 NC_012920 mitfi exon 5657 5729 0.0740000009537 - . Parent=transcript_trnN;Name=trnN 21 NC_012920\tmitfi\texon\t5657\t5729\t[-0-9.e]+\t-\t\.\tParent=transcript_trnN;Name=trnN
22 NC_012920 mitfi ncRNA_gene 5826 5891 . - . ID=gene_trnY;gene_id=trnY 22 NC_012920\tmitfi\tncRNA_gene\t5826\t5891\t\.\t-\t\.\tID=gene_trnY;gene_id=trnY
23 NC_012920 mitfi tRNA 5826 5891 . - . ID=transcript_trnY;Parent=gene_trnY;gene_id=trnY 23 NC_012920\tmitfi\ttRNA\t5826\t5891\t\.\t-\t\.\tID=transcript_trnY;Parent=gene_trnY;gene_id=trnY
24 NC_012920 mitfi exon 5826 5891 4.20000016347e-15 - . Parent=transcript_trnY;Name=trnY 24 NC_012920\tmitfi\texon\t5826\t5891\t[-0-9.e]+\t-\t\.\tParent=transcript_trnY;Name=trnY
25 NC_012920 mitfi ncRNA_gene 7446 7514 . - . ID=gene_trnS2;gene_id=trnS2 25 NC_012920\tmitfi\tncRNA_gene\t7446\t7514\t\.\t-\t\.\tID=gene_trnS2;gene_id=trnS2
26 NC_012920 mitfi tRNA 7446 7514 . - . ID=transcript_trnS2;Parent=gene_trnS2;gene_id=trnS2 26 NC_012920\tmitfi\ttRNA\t7446\t7514\t\.\t-\t\.\tID=transcript_trnS2;Parent=gene_trnS2;gene_id=trnS2
27 NC_012920 mitfi exon 7446 7514 0.0399999991059 - . Parent=transcript_trnS2;Name=trnS2 27 NC_012920\tmitfi\texon\t7446\t7514\t[-0-9.e]+\t-\t\.\tParent=transcript_trnS2;Name=trnS2
28 NC_012920 mitfi ncRNA_gene 7518 7585 . + . ID=gene_trnD;gene_id=trnD 28 NC_012920\tmitfi\tncRNA_gene\t7518\t7585\t\.\t\+\t\.\tID=gene_trnD;gene_id=trnD
29 NC_012920 mitfi tRNA 7518 7585 . + . ID=transcript_trnD;Parent=gene_trnD;gene_id=trnD 29 NC_012920\tmitfi\ttRNA\t7518\t7585\t\.\t\+\t\.\tID=transcript_trnD;Parent=gene_trnD;gene_id=trnD
30 NC_012920 mitfi exon 7518 7585 0.000709999992978 + . Parent=transcript_trnD;Name=trnD 30 NC_012920\tmitfi\texon\t7518\t7585\t[-0-9.e]+\t\+\t\.\tParent=transcript_trnD;Name=trnD
31 NC_012920 mitfi ncRNA_gene 8295 8364 . + . ID=gene_trnK;gene_id=trnK 31 NC_012920\tmitfi\tncRNA_gene\t8295\t8364\t\.\t\+\t\.\tID=gene_trnK;gene_id=trnK
32 NC_012920 mitfi tRNA 8295 8364 . + . ID=transcript_trnK;Parent=gene_trnK;gene_id=trnK 32 NC_012920\tmitfi\ttRNA\t8295\t8364\t\.\t\+\t\.\tID=transcript_trnK;Parent=gene_trnK;gene_id=trnK
33 NC_012920 mitfi exon 8295 8364 0.0379999987781 + . Parent=transcript_trnK;Name=trnK 33 NC_012920\tmitfi\texon\t8295\t8364\t[-0-9.e]+\t\+\t\.\tParent=transcript_trnK;Name=trnK
34 NC_012920 mitfi ncRNA_gene 10405 10469 . + . ID=gene_trnR;gene_id=trnR 34 NC_012920\tmitfi\tncRNA_gene\t10405\t10469\t\.\t\+\t\.\tID=gene_trnR;gene_id=trnR
35 NC_012920 mitfi tRNA 10405 10469 . + . ID=transcript_trnR;Parent=gene_trnR;gene_id=trnR 35 NC_012920\tmitfi\ttRNA\t10405\t10469\t\.\t\+\t\.\tID=transcript_trnR;Parent=gene_trnR;gene_id=trnR
36 NC_012920 mitfi exon 10405 10469 0.00510000018403 + . Parent=transcript_trnR;Name=trnR 36 NC_012920\tmitfi\texon\t10405\t10469\t[-0-9.e]+\t\+\t\.\tParent=transcript_trnR;Name=trnR
37 NC_012920 mitfi ncRNA_gene 12138 12206 . + . ID=gene_trnH;gene_id=trnH 37 NC_012920\tmitfi\tncRNA_gene\t12138\t12206\t\.\t\+\t\.\tID=gene_trnH;gene_id=trnH
38 NC_012920 mitfi tRNA 12138 12206 . + . ID=transcript_trnH;Parent=gene_trnH;gene_id=trnH 38 NC_012920\tmitfi\ttRNA\t12138\t12206\t\.\t\+\t\.\tID=transcript_trnH;Parent=gene_trnH;gene_id=trnH
39 NC_012920 mitfi exon 12138 12206 1.99999999495e-06 + . Parent=transcript_trnH;Name=trnH 39 NC_012920\tmitfi\texon\t12138\t12206\t[-0-9.e]+\t\+\t\.\tParent=transcript_trnH;Name=trnH
40 NC_012920 mitfi ncRNA_gene 12266 12336 . + . ID=gene_trnL1;gene_id=trnL1 40 NC_012920\tmitfi\tncRNA_gene\t12266\t12336\t\.\t\+\t\.\tID=gene_trnL1;gene_id=trnL1
41 NC_012920 mitfi tRNA 12266 12336 . + . ID=transcript_trnL1;Parent=gene_trnL1;gene_id=trnL1 41 NC_012920\tmitfi\ttRNA\t12266\t12336\t\.\t\+\t\.\tID=transcript_trnL1;Parent=gene_trnL1;gene_id=trnL1
42 NC_012920 mitfi exon 12266 12336 0.0260000005364 + . Parent=transcript_trnL1;Name=trnL1 42 NC_012920\tmitfi\texon\t12266\t12336\t[-0-9.e]+\t\+\t\.\tParent=transcript_trnL1;Name=trnL1
43 NC_012920 mitos gene 14149 14670 . - . ID=gene_nad6;gene_id=nad6 43 NC_012920\tmitos\tgene\t14149\t14670\t\.\t-\t\.\tID=gene_nad6;gene_id=nad6
44 NC_012920 mitos mRNA 14149 14670 . - . ID=transcript_nad6;Parent=gene_nad6;gene_id=nad6 44 NC_012920\tmitos\tmRNA\t14149\t14670\t\.\t-\t\.\tID=transcript_nad6;Parent=gene_nad6;gene_id=nad6
45 NC_012920 mitos exon 14149 14670 39.7 - 2.0 Parent=transcript_nad6;Name=nad6 45 NC_012920\tmitos\texon\t14149\t14670\t[-0-9.e]+\t-\t2\.0\tParent=transcript_nad6;Name=nad6
46 NC_012920 mitfi ncRNA_gene 14674 14742 . - . ID=gene_trnE;gene_id=trnE 46 NC_012920\tmitfi\tncRNA_gene\t14674\t14742\t\.\t-\t\.\tID=gene_trnE;gene_id=trnE
47 NC_012920 mitfi tRNA 14674 14742 . - . ID=transcript_trnE;Parent=gene_trnE;gene_id=trnE 47 NC_012920\tmitfi\ttRNA\t14674\t14742\t\.\t-\t\.\tID=transcript_trnE;Parent=gene_trnE;gene_id=trnE
48 NC_012920 mitfi exon 14674 14742 0.0320000015199 - . Parent=transcript_trnE;Name=trnE 48 NC_012920\tmitfi\texon\t14674\t14742\t[-0-9.e]+\t-\t\.\tParent=transcript_trnE;Name=trnE
49 NC_012920 mitfi ncRNA_gene 15888 15953 . + . ID=gene_trnT;gene_id=trnT 49 NC_012920\tmitfi\tncRNA_gene\t15888\t15953\t\.\t\+\t\.\tID=gene_trnT;gene_id=trnT
50 NC_012920 mitfi tRNA 15888 15953 . + . ID=transcript_trnT;Parent=gene_trnT;gene_id=trnT 50 NC_012920\tmitfi\ttRNA\t15888\t15953\t\.\t\+\t\.\tID=transcript_trnT;Parent=gene_trnT;gene_id=trnT
51 NC_012920 mitfi exon 15888 15953 0.001200000057 + . Parent=transcript_trnT;Name=trnT 51 NC_012920\tmitfi\texon\t15888\t15953\t[-0-9.e]+\t\+\t\.\tParent=transcript_trnT;Name=trnT
52 NC_012920 mitfi ncRNA_gene 15956 16023 . - . ID=gene_trnP;gene_id=trnP 52 NC_012920\tmitfi\tncRNA_gene\t15956\t16023\t\.\t-\t\.\tID=gene_trnP;gene_id=trnP
53 NC_012920 mitfi tRNA 15956 16023 . - . ID=transcript_trnP;Parent=gene_trnP;gene_id=trnP 53 NC_012920\tmitfi\ttRNA\t15956\t16023\t\.\t-\t\.\tID=transcript_trnP;Parent=gene_trnP;gene_id=trnP
54 NC_012920 mitfi exon 15956 16023 0.00520000001416 - . Parent=transcript_trnP;Name=trnP 54 NC_012920\tmitfi\texon\t15956\t16023\t[-0-9.e]+\t-\t\.\tParent=transcript_trnP;Name=trnP