annotate test-data/mitos2_NC_012920.gff @ 9:c8ac28e8ac44 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mitos commit 921fa90438b4ce2e9cf9c4129568f4036c318d82

##gff-version 3
#!gff-spec-version 1\.21
NC_012920\tmitos\tregion\t1\t16569\t\.\t\+\t\.\tID=NC_012920:1\.\.16569;Is_circular=True;Name=NC_012920;genome=mitochondrion;mol_type=genomic DNA
NC_012920\tmitfi\tncRNA_gene\t577\t647\t\.\t\+\t\.\tID=gene_trnF;Name=trnF;gene_id=trnF
NC_012920\tmitfi\ttRNA\t577\t647\t\.\t\+\t\.\tID=transcript_trnF\(gaa\);Name=trnF\(gaa\);Parent=gene_trnF\(gaa\);gene_id=trnF\(gaa\)
NC_012920\tmitfi\texon\t577\t647\t9\.999999747378752e-06\t\+\t\.\tParent=transcript_trnF;Name=trnF
NC_012920\tmitfi\tncRNA_gene\t648\t1601\t\.\t\+\t\.\tID=gene_rrnS;Name=rrnS;gene_id=rrnS
NC_012920\tmitfi\trRNA\t648\t1601\t\.\t\+\t\.\tID=transcript_rrnS;Name=rrnS;Parent=gene_rrnS;gene_id=rrnS
NC_012920\tmitfi\texon\t648\t1601\t0\.0\t\+\t\.\tParent=transcript_rrnS;Name=rrnS
NC_012920\tmitfi\tncRNA_gene\t3230\t3304\t\.\t\+\t\.\tID=gene_trnL2;Name=trnL2;gene_id=trnL2
NC_012920\tmitfi\ttRNA\t3230\t3304\t\.\t\+\t\.\tID=transcript_trnL2\(taa\);Name=trnL2\(taa\);Parent=gene_trnL2\(taa\);gene_id=trnL2\(taa\)
NC_012920\tmitfi\texon\t3230\t3304\t2\.100000074278796e-06\t\+\t\.\tParent=transcript_trnL2;Name=trnL2
NC_012920\tmitfi\tncRNA_gene\t4263\t4331\t\.\t\+\t\.\tID=gene_trnI;Name=trnI;gene_id=trnI
NC_012920\tmitfi\ttRNA\t4263\t4331\t\.\t\+\t\.\tID=transcript_trnI\(gat\);Name=trnI\(gat\);Parent=gene_trnI\(gat\);gene_id=trnI\(gat\)
NC_012920\tmitfi\texon\t4263\t4331\t6\.000000212225132e-07\t\+\t\.\tParent=transcript_trnI;Name=trnI
NC_012920\tmitfi\tncRNA_gene\t4402\t4469\t\.\t\+\t\.\tID=gene_trnM;Name=trnM;gene_id=trnM
NC_012920\tmitfi\ttRNA\t4402\t4469\t\.\t\+\t\.\tID=transcript_trnM\(cat\);Name=trnM\(cat\);Parent=gene_trnM\(cat\);gene_id=trnM\(cat\)
NC_012920\tmitfi\texon\t4402\t4469\t0\.0034000000450760126\t\+\t\.\tParent=transcript_trnM;Name=trnM
NC_012920\tmitfi\tncRNA_gene\t5587\t5655\t\.\t-\t\.\tID=gene_trnA;Name=trnA;gene_id=trnA
NC_012920\tmitfi\ttRNA\t5587\t5655\t\.\t-\t\.\tID=transcript_trnA\(tgc\);Name=trnA\(tgc\);Parent=gene_trnA\(tgc\);gene_id=trnA\(tgc\)
NC_012920\tmitfi\texon\t5587\t5655\t0\.0017999999690800905\t-\t\.\tParent=transcript_trnA;Name=trnA
NC_012920\tmitfi\tncRNA_gene\t5657\t5729\t\.\t-\t\.\tID=gene_trnN;Name=trnN;gene_id=trnN
NC_012920\tmitfi\ttRNA\t5657\t5729\t\.\t-\t\.\tID=transcript_trnN\(gtt\);Name=trnN\(gtt\);Parent=gene_trnN\(gtt\);gene_id=trnN\(gtt\)
NC_012920\tmitfi\texon\t5657\t5729\t0\.07400000095367432\t-\t\.\tParent=transcript_trnN;Name=trnN
NC_012920\tmitfi\tncRNA_gene\t5826\t5891\t\.\t-\t\.\tID=gene_trnY;Name=trnY;gene_id=trnY
NC_012920\tmitfi\ttRNA\t5826\t5891\t\.\t-\t\.\tID=transcript_trnY\(gta\);Name=trnY\(gta\);Parent=gene_trnY\(gta\);gene_id=trnY\(gta\)
NC_012920\tmitfi\texon\t5826\t5891\t4\.2000001634662394e-15\t-\t\.\tParent=transcript_trnY;Name=trnY
NC_012920\tmitfi\tncRNA_gene\t7446\t7514\t\.\t-\t\.\tID=gene_trnS2;Name=trnS2;gene_id=trnS2
NC_012920\tmitfi\ttRNA\t7446\t7514\t\.\t-\t\.\tID=transcript_trnS2\(tga\);Name=trnS2\(tga\);Parent=gene_trnS2\(tga\);gene_id=trnS2\(tga\)
NC_012920\tmitfi\texon\t7446\t7514\t0\.03999999910593033\t-\t\.\tParent=transcript_trnS2;Name=trnS2
NC_012920\tmitfi\tncRNA_gene\t7518\t7585\t\.\t\+\t\.\tID=gene_trnD;Name=trnD;gene_id=trnD
NC_012920\tmitfi\ttRNA\t7518\t7585\t\.\t\+\t\.\tID=transcript_trnD\(gtc\);Name=trnD\(gtc\);Parent=gene_trnD\(gtc\);gene_id=trnD\(gtc\)
NC_012920\tmitfi\texon\t7518\t7585\t0\.0007099999929778278\t\+\t\.\tParent=transcript_trnD;Name=trnD
NC_012920\tmitfi\tncRNA_gene\t8295\t8364\t\.\t\+\t\.\tID=gene_trnK;Name=trnK;gene_id=trnK
NC_012920\tmitfi\ttRNA\t8295\t8364\t\.\t\+\t\.\tID=transcript_trnK\(ttt\);Name=trnK\(ttt\);Parent=gene_trnK\(ttt\);gene_id=trnK\(ttt\)
NC_012920\tmitfi\texon\t8295\t8364\t0\.03799999877810478\t\+\t\.\tParent=transcript_trnK;Name=trnK
NC_012920\tmitfi\tncRNA_gene\t10405\t10469\t\.\t\+\t\.\tID=gene_trnR;Name=trnR;gene_id=trnR
NC_012920\tmitfi\ttRNA\t10405\t10469\t\.\t\+\t\.\tID=transcript_trnR\(tcg\);Name=trnR\(tcg\);Parent=gene_trnR\(tcg\);gene_id=trnR\(tcg\)
NC_012920\tmitfi\texon\t10405\t10469\t0\.005100000184029341\t\+\t\.\tParent=transcript_trnR;Name=trnR
NC_012920\tmitfi\tncRNA_gene\t12138\t12206\t\.\t\+\t\.\tID=gene_trnH;Name=trnH;gene_id=trnH
NC_012920\tmitfi\ttRNA\t12138\t12206\t\.\t\+\t\.\tID=transcript_trnH\(gtg\);Name=trnH\(gtg\);Parent=gene_trnH\(gtg\);gene_id=trnH\(gtg\)
NC_012920\tmitfi\texon\t12138\t12206\t1\.9999999949504854e-06\t\+\t\.\tParent=transcript_trnH;Name=trnH
NC_012920\tmitfi\tncRNA_gene\t12266\t12336\t\.\t\+\t\.\tID=gene_trnL1;Name=trnL1;gene_id=trnL1
NC_012920\tmitfi\ttRNA\t12266\t12336\t\.\t\+\t\.\tID=transcript_trnL1\(tag\);Name=trnL1\(tag\);Parent=gene_trnL1\(tag\);gene_id=trnL1\(tag\)
NC_012920\tmitfi\texon\t12266\t12336\t0\.026000000536441803\t\+\t\.\tParent=transcript_trnL1;Name=trnL1
NC_012920\tmitos\tgene\t14149\t14670\t\.\t-\t\.\tID=gene_nad6;Name=nad6;gene_id=nad6
NC_012920\tmitos\texon\t14149\t14670\t39\.7\t-\t0\tParent=transcript_nad6;Name=nad6
NC_012920\tmitfi\tncRNA_gene\t14674\t14742\t\.\t-\t\.\tID=gene_trnE;Name=trnE;gene_id=trnE
NC_012920\tmitfi\ttRNA\t14674\t14742\t\.\t-\t\.\tID=transcript_trnE\(ttc\);Name=trnE\(ttc\);Parent=gene_trnE\(ttc\);gene_id=trnE\(ttc\)
NC_012920\tmitfi\texon\t14674\t14742\t0\.03200000151991844\t-\t\.\tParent=transcript_trnE;Name=trnE
NC_012920\tmitfi\tncRNA_gene\t15888\t15953\t\.\t\+\t\.\tID=gene_trnT;Name=trnT;gene_id=trnT
NC_012920\tmitfi\ttRNA\t15888\t15953\t\.\t\+\t\.\tID=transcript_trnT\(tgt\);Name=trnT\(tgt\);Parent=gene_trnT\(tgt\);gene_id=trnT\(tgt\)
NC_012920\tmitfi\texon\t15888\t15953\t0\.0012000000569969416\t\+\t\.\tParent=transcript_trnT;Name=trnT
NC_012920\tmitfi\tncRNA_gene\t15956\t16023\t\.\t-\t\.\tID=gene_trnP;Name=trnP;gene_id=trnP
NC_012920\tmitfi\ttRNA\t15956\t16023\t\.\t-\t\.\tID=transcript_trnP\(tgg\);Name=trnP\(tgg\);Parent=gene_trnP\(tgg\);gene_id=trnP\(tgg\)
NC_012920\tmitfi\texon\t15956\t16023\t0\.005200000014156103\t-\t\.\tParent=transcript_trnP;Name=trnP