comparison mitos2.xml @ 9:c8ac28e8ac44 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mitos commit 921fa90438b4ce2e9cf9c4129568f4036c318d82

8:73b018c57e96

<tool id="mitos2" name="@MITOS_NAME@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05">
  <description>de-novo annotation of metazoan mitochondrial genomes</description>
  <macros>
    <import>macros.xml</import>
    <token name="@MITOS_NAME@">MITOS2</token>
    <token name="@TOOL_VERSION@">2.1.8</token>
    <token name="@VERSION_SUFFIX@">0</token>
  </macros>
  <xrefs>
      <xref type="bio.tools">mitos</xref>
  </xrefs>

    <param argument="--input" label="Sequence" type="data" format="fasta" help="A single sequence in fasta formated sequence">
      <validator type="dataset_metadata_in_range" metadata_name="sequences" min="1" max="1"/>
    </param> 
    <param argument="--code" label="Genetic code" type="select">
      <option value="2">Vertebrate (2)</option>
      <option value="4">Mold, Protozoan, Coelenteral (4)</option>
      <option value="5">Invertebrate (5)</option>
      <option value="9">Echinoderm, Flatworm (9)</option>
      <option value="13">Ascidian (13)</option>
      <option value="14">Alternative Flatworm (14)</option>
    </param>
    <param argument="--refseqver" label="Reference data" type="select" help="Contact the administrator of this Galaxy instance if you miss reference data">
        <options from_data_table="mitos">
          <filter type="static_value" value="mitos2" column="2"/>
        </options>

9:c8ac28e8ac44

<tool id="mitos2" name="@MITOS_NAME@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05">
  <description>de-novo annotation of metazoan mitochondrial genomes</description>
  <macros>
    <import>macros.xml</import>
    <token name="@MITOS_NAME@">MITOS2</token>
    <token name="@TOOL_VERSION@">2.1.9</token>
    <token name="@VERSION_SUFFIX@">0</token>
  </macros>
  <xrefs>
      <xref type="bio.tools">mitos</xref>
  </xrefs>

    <param argument="--input" label="Sequence" type="data" format="fasta" help="A single sequence in fasta formated sequence">
      <validator type="dataset_metadata_in_range" metadata_name="sequences" min="1" max="1"/>
    </param> 
    <param argument="--code" label="Genetic code" type="select">
      <option value="2">Vertebrate (2)</option>
      <option value="3">Yeast (3)</option>
      <option value="4">Mold, Protozoan, Coelenteral (4)</option>
      <option value="5">Invertebrate (5)</option>
      <option value="9">Echinoderm, Flatworm (9)</option>
      <option value="13">Ascidian (13)</option>
      <option value="14">Alternative Flatworm (14)</option>
      <option value="21">Trematode (21)</option>
      <option value="24">Rhabdopleuridae (24)</option>
      <option value="33">Cephalodiscidae (33)</option>
    </param>
    <param argument="--refseqver" label="Reference data" type="select" help="Contact the administrator of this Galaxy instance if you miss reference data">
        <options from_data_table="mitos">
          <filter type="static_value" value="mitos2" column="2"/>
        </options>