diff test-data/NC_012920.gff @ 6:af3c1dc1d141 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mitos commit ce2e351eec55ba7cd976386c1ede76ea98c8db1c
author iuc
date Thu, 25 Jan 2024 16:47:56 +0000
parents dd589aa77943
children
line wrap: on
line diff
--- a/test-data/NC_012920.gff	Fri Jan 19 21:29:17 2024 +0000
+++ b/test-data/NC_012920.gff	Thu Jan 25 16:47:56 2024 +0000
@@ -1,25 +1,28 @@
-NC_012920	mitfi	tRNA	577	647	1.127e-05	+	.	Name=trnF(gaa)	; model Y; evalue 0.000011; pvalue 0.000000; qstart 1; qstop 68
-NC_012920	mitfi	tRNA	1602	1670	1.671e-06	+	.	Name=trnV(tac)	; model A; evalue 0.000002; pvalue 0.000000; qstart 1; qstop 65
-NC_012920	mitfi	tRNA	3230	3304	0.0006685	+	.	Name=trnL2(taa)	; model Y; evalue 0.000669; pvalue 0.000001; qstart 1; qstop 68
-NC_012920	mitfi	tRNA	4263	4331	5.584e-05	+	.	Name=trnI(gat)	; model Y; evalue 0.000056; pvalue 0.000000; qstart 1; qstop 68
-NC_012920	mitfi	tRNA	4329	4400	0.097	-	.	Name=trnQ(ttg)	; model Y; evalue 0.097000; pvalue 0.000096; qstart 1; qstop 68
-NC_012920	mitfi	tRNA	4402	4469	0.001232	+	.	Name=trnM(cat)	; model A; evalue 0.001232; pvalue 0.000001; qstart 1; qstop 65
-NC_012920	mitfi	tRNA	5512	5579	0.001059	+	.	Name=trnW(tca)	; model Y; evalue 0.001059; pvalue 0.000001; qstart 1; qstop 68
-NC_012920	mitfi	tRNA	5587	5655	1.529e-08	-	.	Name=trnA(tgc)	; model A; evalue 0.000000; pvalue 0.000000; qstart 1; qstop 65
-NC_012920	mitfi	tRNA	5659	5721	0.1419	-	.	Name=trnN(gtt)	; model Y; evalue 0.141900; pvalue 0.000140; qstart 1; qstop 68
-NC_012920	mitfi	tRNA	5761	5826	0.0006482	-	.	Name=trnC(gca)	; model Y; evalue 0.000648; pvalue 0.000001; qstart 1; qstop 68
-NC_012920	mitfi	rRNA	5761	5826	2.104e-11	-	.	Name=rrnS	; model rrnS; evalue 0.000000; pvalue 0.000000; qstart 1; qstop 66
-NC_012920	mitfi	tRNA	5827	5891	1.031e-09	-	.	Name=trnY(gta)	; model Y; evalue 0.000000; pvalue 0.000000; qstart 1; qstop 68
-NC_012920	mitfi	tRNA	7446	7514	0.0475	-	.	Name=trnS2(tga)	; model Y; evalue 0.047500; pvalue 0.000047; qstart 1; qstop 68
-NC_012920	mitfi	tRNA	7518	7585	0.0005019	+	.	Name=trnD(gtc)	; model A; evalue 0.000502; pvalue 0.000000; qstart 1; qstop 65
-NC_012920	mitfi	rRNA	7518	7585	7.886e-12	+	.	Name=rrnL	; model rrnL; evalue 0.000000; pvalue 0.000000; qstart 1; qstop 67
-NC_012920	mitfi	tRNA	8295	8364	0.0007967	+	.	Name=trnK(ttt)	; model Y; evalue 0.000797; pvalue 0.000001; qstart 1; qstop 68
-NC_012920	mitfi	tRNA	9991	10058	7.29e-06	+	.	Name=trnG(tcc)	; model A; evalue 0.000007; pvalue 0.000000; qstart 1; qstop 65
-NC_012920	mitfi	tRNA	10405	10469	2.068e-06	+	.	Name=trnR(tcg)	; model A; evalue 0.000002; pvalue 0.000000; qstart 1; qstop 65
-NC_012920	mitfi	tRNA	12138	12206	2.765e-06	+	.	Name=trnH(gtg)	; model Y; evalue 0.000003; pvalue 0.000000; qstart 1; qstop 68
-NC_012920	mitfi	tRNA	12266	12336	0.09648	+	.	Name=trnL1(tag)	; model A; evalue 0.096480; pvalue 0.000093; qstart 1; qstop 65
-NC_012920	mitfi	rRNA	12770	12817	0.1077	-	.	Name=rrnS	; model rrnS; evalue 0.107700; pvalue 0.000099; qstart 1; qstop 66
+##gff-version 3
+#!gff-spec-version 1.21
+NC_012920	mitos	region	1	16569	.	+	.	ID=NC_012920:1..16569;Is_circular=False;Name=NC_012920;genome=mitochondrion;mol_type=genomic DNA
+NC_012920	mitfi	tRNA	577	647	1.127e-05	+	.	Name=trnF(gaa)
+NC_012920	mitfi	tRNA	1602	1670	1.671e-06	+	.	Name=trnV(tac)
+NC_012920	mitfi	tRNA	3230	3304	0.0006685	+	.	Name=trnL2(taa)
+NC_012920	mitfi	tRNA	4263	4331	5.584e-05	+	.	Name=trnI(gat)
+NC_012920	mitfi	tRNA	4329	4400	0.097	-	.	Name=trnQ(ttg)
+NC_012920	mitfi	tRNA	4402	4469	0.001232	+	.	Name=trnM(cat)
+NC_012920	mitfi	tRNA	5512	5579	0.001059	+	.	Name=trnW(tca)
+NC_012920	mitfi	tRNA	5587	5655	1.529e-08	-	.	Name=trnA(tgc)
+NC_012920	mitfi	tRNA	5659	5721	0.1419	-	.	Name=trnN(gtt)
+NC_012920	mitfi	tRNA	5761	5826	0.0006482	-	.	Name=trnC(gca)
+NC_012920	mitfi	rRNA	5761	5826	2.104e-11	-	.	Name=rrnS
+NC_012920	mitfi	tRNA	5827	5891	1.031e-09	-	.	Name=trnY(gta)
+NC_012920	mitfi	tRNA	7446	7514	0.0475	-	.	Name=trnS2(tga)
+NC_012920	mitfi	tRNA	7518	7585	0.0005019	+	.	Name=trnD(gtc)
+NC_012920	mitfi	rRNA	7518	7585	7.886e-12	+	.	Name=rrnL
+NC_012920	mitfi	tRNA	8295	8364	0.0007967	+	.	Name=trnK(ttt)
+NC_012920	mitfi	tRNA	9991	10058	7.29e-06	+	.	Name=trnG(tcc)
+NC_012920	mitfi	tRNA	10405	10469	2.068e-06	+	.	Name=trnR(tcg)
+NC_012920	mitfi	tRNA	12138	12206	2.765e-06	+	.	Name=trnH(gtg)
+NC_012920	mitfi	tRNA	12266	12336	0.09648	+	.	Name=trnL1(tag)
+NC_012920	mitfi	rRNA	12770	12817	0.1077	-	.	Name=rrnS
 NC_012920	mitos	gene	14155	14673	24486974.4	-	.	Name=nad6
-NC_012920	mitfi	tRNA	14674	14742	3.085e-06	-	.	Name=trnE(ttc)	; model A; evalue 0.000003; pvalue 0.000000; qstart 1; qstop 65
-NC_012920	mitfi	tRNA	15888	15953	1.962e-08	+	.	Name=trnT(tgt)	; model A; evalue 0.000000; pvalue 0.000000; qstart 1; qstop 65
-NC_012920	mitfi	tRNA	15956	16023	1.555e-06	-	.	Name=trnP(tgg)	; model A; evalue 0.000002; pvalue 0.000000; qstart 1; qstop 65
+NC_012920	mitfi	tRNA	14674	14742	3.085e-06	-	.	Name=trnE(ttc)
+NC_012920	mitfi	tRNA	15888	15953	1.962e-08	+	.	Name=trnT(tgt)
+NC_012920	mitfi	tRNA	15956	16023	1.555e-06	-	.	Name=trnP(tgg)