Mercurial > repos > iuc > mitos2
diff test-data/NC_012920.gff @ 6:af3c1dc1d141 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mitos commit ce2e351eec55ba7cd976386c1ede76ea98c8db1c
| author | iuc |
|---|---|
| date | Thu, 25 Jan 2024 16:47:56 +0000 |
| parents | dd589aa77943 |
| children |
line wrap: on
line diff
--- a/test-data/NC_012920.gff Fri Jan 19 21:29:17 2024 +0000 +++ b/test-data/NC_012920.gff Thu Jan 25 16:47:56 2024 +0000 @@ -1,25 +1,28 @@ -NC_012920 mitfi tRNA 577 647 1.127e-05 + . Name=trnF(gaa) ; model Y; evalue 0.000011; pvalue 0.000000; qstart 1; qstop 68 -NC_012920 mitfi tRNA 1602 1670 1.671e-06 + . Name=trnV(tac) ; model A; evalue 0.000002; pvalue 0.000000; qstart 1; qstop 65 -NC_012920 mitfi tRNA 3230 3304 0.0006685 + . Name=trnL2(taa) ; model Y; evalue 0.000669; pvalue 0.000001; qstart 1; qstop 68 -NC_012920 mitfi tRNA 4263 4331 5.584e-05 + . Name=trnI(gat) ; model Y; evalue 0.000056; pvalue 0.000000; qstart 1; qstop 68 -NC_012920 mitfi tRNA 4329 4400 0.097 - . Name=trnQ(ttg) ; model Y; evalue 0.097000; pvalue 0.000096; qstart 1; qstop 68 -NC_012920 mitfi tRNA 4402 4469 0.001232 + . Name=trnM(cat) ; model A; evalue 0.001232; pvalue 0.000001; qstart 1; qstop 65 -NC_012920 mitfi tRNA 5512 5579 0.001059 + . Name=trnW(tca) ; model Y; evalue 0.001059; pvalue 0.000001; qstart 1; qstop 68 -NC_012920 mitfi tRNA 5587 5655 1.529e-08 - . Name=trnA(tgc) ; model A; evalue 0.000000; pvalue 0.000000; qstart 1; qstop 65 -NC_012920 mitfi tRNA 5659 5721 0.1419 - . Name=trnN(gtt) ; model Y; evalue 0.141900; pvalue 0.000140; qstart 1; qstop 68 -NC_012920 mitfi tRNA 5761 5826 0.0006482 - . Name=trnC(gca) ; model Y; evalue 0.000648; pvalue 0.000001; qstart 1; qstop 68 -NC_012920 mitfi rRNA 5761 5826 2.104e-11 - . Name=rrnS ; model rrnS; evalue 0.000000; pvalue 0.000000; qstart 1; qstop 66 -NC_012920 mitfi tRNA 5827 5891 1.031e-09 - . Name=trnY(gta) ; model Y; evalue 0.000000; pvalue 0.000000; qstart 1; qstop 68 -NC_012920 mitfi tRNA 7446 7514 0.0475 - . Name=trnS2(tga) ; model Y; evalue 0.047500; pvalue 0.000047; qstart 1; qstop 68 -NC_012920 mitfi tRNA 7518 7585 0.0005019 + . Name=trnD(gtc) ; model A; evalue 0.000502; pvalue 0.000000; qstart 1; qstop 65 -NC_012920 mitfi rRNA 7518 7585 7.886e-12 + . Name=rrnL ; model rrnL; evalue 0.000000; pvalue 0.000000; qstart 1; qstop 67 -NC_012920 mitfi tRNA 8295 8364 0.0007967 + . Name=trnK(ttt) ; model Y; evalue 0.000797; pvalue 0.000001; qstart 1; qstop 68 -NC_012920 mitfi tRNA 9991 10058 7.29e-06 + . Name=trnG(tcc) ; model A; evalue 0.000007; pvalue 0.000000; qstart 1; qstop 65 -NC_012920 mitfi tRNA 10405 10469 2.068e-06 + . Name=trnR(tcg) ; model A; evalue 0.000002; pvalue 0.000000; qstart 1; qstop 65 -NC_012920 mitfi tRNA 12138 12206 2.765e-06 + . Name=trnH(gtg) ; model Y; evalue 0.000003; pvalue 0.000000; qstart 1; qstop 68 -NC_012920 mitfi tRNA 12266 12336 0.09648 + . Name=trnL1(tag) ; model A; evalue 0.096480; pvalue 0.000093; qstart 1; qstop 65 -NC_012920 mitfi rRNA 12770 12817 0.1077 - . Name=rrnS ; model rrnS; evalue 0.107700; pvalue 0.000099; qstart 1; qstop 66 +##gff-version 3 +#!gff-spec-version 1.21 +NC_012920 mitos region 1 16569 . + . ID=NC_012920:1..16569;Is_circular=False;Name=NC_012920;genome=mitochondrion;mol_type=genomic DNA +NC_012920 mitfi tRNA 577 647 1.127e-05 + . Name=trnF(gaa) +NC_012920 mitfi tRNA 1602 1670 1.671e-06 + . Name=trnV(tac) +NC_012920 mitfi tRNA 3230 3304 0.0006685 + . Name=trnL2(taa) +NC_012920 mitfi tRNA 4263 4331 5.584e-05 + . Name=trnI(gat) +NC_012920 mitfi tRNA 4329 4400 0.097 - . Name=trnQ(ttg) +NC_012920 mitfi tRNA 4402 4469 0.001232 + . Name=trnM(cat) +NC_012920 mitfi tRNA 5512 5579 0.001059 + . Name=trnW(tca) +NC_012920 mitfi tRNA 5587 5655 1.529e-08 - . Name=trnA(tgc) +NC_012920 mitfi tRNA 5659 5721 0.1419 - . Name=trnN(gtt) +NC_012920 mitfi tRNA 5761 5826 0.0006482 - . Name=trnC(gca) +NC_012920 mitfi rRNA 5761 5826 2.104e-11 - . Name=rrnS +NC_012920 mitfi tRNA 5827 5891 1.031e-09 - . Name=trnY(gta) +NC_012920 mitfi tRNA 7446 7514 0.0475 - . Name=trnS2(tga) +NC_012920 mitfi tRNA 7518 7585 0.0005019 + . Name=trnD(gtc) +NC_012920 mitfi rRNA 7518 7585 7.886e-12 + . Name=rrnL +NC_012920 mitfi tRNA 8295 8364 0.0007967 + . Name=trnK(ttt) +NC_012920 mitfi tRNA 9991 10058 7.29e-06 + . Name=trnG(tcc) +NC_012920 mitfi tRNA 10405 10469 2.068e-06 + . Name=trnR(tcg) +NC_012920 mitfi tRNA 12138 12206 2.765e-06 + . Name=trnH(gtg) +NC_012920 mitfi tRNA 12266 12336 0.09648 + . Name=trnL1(tag) +NC_012920 mitfi rRNA 12770 12817 0.1077 - . Name=rrnS NC_012920 mitos gene 14155 14673 24486974.4 - . Name=nad6 -NC_012920 mitfi tRNA 14674 14742 3.085e-06 - . Name=trnE(ttc) ; model A; evalue 0.000003; pvalue 0.000000; qstart 1; qstop 65 -NC_012920 mitfi tRNA 15888 15953 1.962e-08 + . Name=trnT(tgt) ; model A; evalue 0.000000; pvalue 0.000000; qstart 1; qstop 65 -NC_012920 mitfi tRNA 15956 16023 1.555e-06 - . Name=trnP(tgg) ; model A; evalue 0.000002; pvalue 0.000000; qstart 1; qstop 65 +NC_012920 mitfi tRNA 14674 14742 3.085e-06 - . Name=trnE(ttc) +NC_012920 mitfi tRNA 15888 15953 1.962e-08 + . Name=trnT(tgt) +NC_012920 mitfi tRNA 15956 16023 1.555e-06 - . Name=trnP(tgg)