diff test-data/refseq63m/ncRNA/tRNA.cm @ 0:dd589aa77943 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mitos commit 791f28c8a7194fdd1ecec05ad166932d461899b2"
author iuc
date Fri, 27 Mar 2020 17:53:42 -0400
parents
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/refseq63m/ncRNA/tRNA.cm	Fri Mar 27 17:53:42 2020 -0400
@@ -0,0 +1,549 @@
+INFERNAL1/a [1.1.2 | July 2016]
+NAME     tRNA
+STATES   224
+NODES    59
+CLEN     70
+W        292
+ALPH     RNA
+RF       no
+CONS     yes
+MAP      yes
+DATE     Wed Jul 11 20:38:39 2018
+COM      [1] /work/berntm/progz/infernal-1.1.2/src//cmbuild -F metazoa/cleaned/tRNA.cm metazoa/cleaned/tRNA.stk
+COM      [2] /work/berntm/progz/infernal-1.1.2/src//cmcalibrate --cpu 8 metazoa/cleaned/tRNA.cm
+PBEGIN   0.05
+PEND     0.05
+WBETA    1e-07
+QDBBETA1 1e-07
+QDBBETA2 1e-15
+N2OMEGA  1.52588e-05
+N3OMEGA  1.52588e-05
+ELSELF   -0.08926734
+NSEQ     82262
+EFFN     82262.000000
+CKSUM    1064118658
+NULL     0.000  0.000  0.000  0.000 
+EFP7GF   -2.1327 0.74584
+ECMLC    0.52308    -6.13287     4.44432     1600000      303379  0.003955
+ECMGC    0.35220    -9.19117     3.81519     1600000       39040  0.010246
+ECMLI    0.45989    -3.74821     7.70110     1600000      232232  0.005167
+ECMGI    0.41215    -3.09079     7.83649     1600000       36141  0.011068
+CM
+                                             [ ROOT    0 ]      -      - - - - -
+     S     0    -1 0     1     4     1     1   292   582 -21.254 -22.499  -0.022  -6.067                 
+    IL     1     1 2     1     4     8    25   294   583  -2.817  -4.319  -0.613  -2.698                  0.000  0.000  0.000  0.000 
+    IR     2     2 3     2     3     8    27   294   584  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR    1 ]      -    254 - a - -
+    MR     3     2 3     5     5    11    29   293   583 -21.280  -0.001 -11.664 -12.226 -12.709          0.966 -2.506 -0.134 -0.061 
+     D     4     2 3     5     5     5    23   291   581  -0.615  -5.362  -4.216  -2.202  -4.278         
+    IR     5     5 3     5     5     8    26   292   582  -1.292  -2.445 -15.694  -1.293 -14.967          0.000  0.000  0.000  0.000 
+                                             [ MATP    2 ]      2    251 g c - -
+    MP     6     5 3    10     6    11    29   292   582 -22.212 -22.151  -0.004  -9.146 -11.033 -12.171 -4.827 -3.071 -6.469  2.251 -6.637 -7.934  1.310 -5.207 -6.452  2.464 -7.883  0.340  0.685 -6.203 -5.149 -3.228 
+    ML     7     5 3    10     6     6    24   287   577 -13.293 -13.640  -3.201  -0.239 -13.489  -4.508  0.799 -1.805 -0.087  0.047 
+    MR     8     5 3    10     6     7    24   290   580 -17.023 -15.752  -0.199 -10.915  -3.333  -5.111 -3.154 -3.305 -3.841  1.894 
+     D     9     5 3    10     6     4    20   279   569 -16.168 -14.866  -3.907 -11.345 -11.362  -0.101 
+    IL    10    10 5    10     6     7    24   291   580  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    11    11 6    11     5     7    24   290   580  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP    3 ]      3    250 a u - -
+    MP    12    11 6    16     6     9    27   290   580  -7.865  -7.913  -0.022  -9.696 -13.446  -7.608 -7.365 -2.929 -8.698  2.871 -5.763 -9.903  0.562 -8.174 -7.168  1.795 -10.373 -1.434  1.614 -7.593 -3.408 -4.719 
+    ML    13    11 6    16     6     6    24   286   576 -14.570 -14.916  -4.979  -0.104 -14.766  -4.728 -0.489 -2.114 -4.279  1.587 
+    MR    14    11 6    16     6     6    22   283   573 -14.245 -12.974  -4.742 -12.953  -0.442  -2.144  1.325 -1.500 -1.594 -0.304 
+     D    15    11 6    16     6     4    20   278   568 -16.789 -15.487  -5.521  -8.394  -8.462  -0.040 
+    IL    16    16 5    16     6    11    30   289   579 -11.127 -11.390  -0.002 -13.045 -13.821 -13.481  0.000  0.000  0.000  0.000 
+    IR    17    17 6    17     5    11    30   289   579 -10.190  -0.002 -13.701 -11.869 -12.975          0.000  0.000  0.000  0.000 
+                                             [ MATP    4 ]      5    248 a u - -
+    MP    18    17 6    22     6    12    30   288   578  -6.814  -6.815  -0.027 -12.261 -10.974 -12.951 -4.402 -2.603 -6.303  2.208 -3.553 -4.945  1.371 -5.338 -8.829  1.976 -7.068 -1.353  1.833 -6.649 -1.233 -3.408 
+    ML    19    17 6    22     6     6    24   285   575  -3.783 -15.378  -1.468  -0.893 -15.228  -5.178 -0.181 -0.753 -0.754  0.950 
+    MR    20    17 6    22     6     6    23   283   573 -13.926 -12.655  -2.954 -12.633  -0.395  -3.180  0.817 -1.363 -0.310  0.061 
+     D    21    17 6    22     6     4    20   278   567 -19.076 -17.774  -7.684  -9.462  -9.140  -0.012 
+    IL    22    22 5    22     6    12    29   287   577  -1.613 -13.045  -0.571 -14.700 -15.476 -15.137  0.000  0.000  0.000  0.000 
+    IR    23    23 6    23     5    12    29   287   577  -1.513  -0.623 -15.409 -13.577 -14.683          0.000  0.000  0.000  0.000 
+                                             [ MATP    5 ]      8    245 a u - -
+    MP    24    23 6    28     6    12    28   286   576  -6.677  -6.848  -0.032  -9.144  -9.027 -14.471 -0.425 -1.282 -1.986  2.305 -2.471 -4.741  0.508 -5.756 -5.426  1.643 -7.274 -0.818  1.863 -4.202 -1.211 -2.773 
+    ML    25    23 6    28     6     6    22   283   573  -2.647 -14.632  -3.954  -0.742 -14.482  -2.491  1.265 -1.365 -2.266  0.002 
+    MR    26    23 6    28     6     6    23   282   572 -14.172 -12.901  -2.869  -8.381  -0.462  -2.900 -0.009  0.682 -1.582  0.095 
+     D    27    23 6    28     6     4    20   278   567 -19.138 -17.836  -7.563  -8.391  -6.177  -0.032 
+    IL    28    28 5    28     6    10    27   285   575  -1.785 -13.114  -0.547  -5.319 -15.546 -15.206  0.000  0.000  0.000  0.000 
+    IR    29    29 6    29     5    10    27   285   575  -1.487  -0.704 -15.392  -5.092 -14.665          0.000  0.000  0.000  0.000 
+                                             [ MATP    6 ]     11    242 a u - -
+    MP    30    29 6    34     6    11    26   284   574  -6.276  -7.853  -0.030  -9.118  -9.829 -12.747 -2.897 -2.833 -4.020  2.746 -3.120 -5.520  0.675 -5.137 -5.844  1.446 -7.919 -1.312  1.820 -5.099 -1.315 -3.550 
+    ML    31    29 6    34     6     7    24   282   572  -2.743 -15.274  -3.180  -0.445 -15.124  -7.472  0.735 -2.049 -4.181  1.028 
+    MR    32    29 6    34     6     7    23   281   571 -15.446 -14.175  -2.100 -14.153  -0.407  -6.309  0.080  0.985 -1.960 -0.500 
+     D    33    29 6    34     6     4    20   278   567 -19.228 -17.927  -7.814  -5.400  -9.731  -0.043 
+    IL    34    34 5    34     6    10    26   285   574  -1.372  -1.372  -2.137 -15.381 -16.157 -15.817  0.000  0.000  0.000  0.000 
+    IR    35    35 6    35     5     8    25   283   573  -1.329  -0.820 -16.040  -4.809 -15.313          0.000  0.000  0.000  0.000 
+                                             [ MATP    7 ]     14    239 a u - -
+    MP    36    35 6    40     6     9    24   282   572  -6.300  -7.381  -0.045  -6.786  -8.451 -17.678 -4.123 -3.567 -7.095  2.370 -3.596 -5.706  0.978 -4.646 -7.249  1.751 -8.338 -1.524  1.784 -3.012 -0.248 -1.198 
+    ML    37    35 6    40     6     6    22   280   570 -15.308 -15.654  -3.354  -0.216 -15.504  -4.593  1.768 -4.100 -3.488 -1.159 
+    MR    38    35 6    40     6     6    21   280   569 -15.817  -5.701  -3.360 -14.525  -0.221  -5.307 -1.532  0.888 -0.814  0.304 
+     D    39    35 6    40     6     4    20   277   567 -19.225 -17.923  -4.890  -6.279  -9.821  -0.071 
+    IL    40    40 5    40     6     8    24   282   571  -1.894  -1.610  -1.310 -15.044 -15.820 -15.480  0.000  0.000  0.000  0.000 
+    IR    41    41 6    41     5     7    23   281   571  -1.929  -0.599 -15.625  -3.816  -7.296          0.000  0.000  0.000  0.000 
+                                             [ MATP    8 ]     17    236 g c - -
+    MP    42    41 6    46     4     7    22   280   569  -6.282  -3.394  -0.169  -8.524                 -5.318 -3.587 -6.359  2.199 -7.350 -9.237 -0.469 -7.970 -4.761  2.655 -5.977 -0.312  1.664 -6.384 -2.600 -4.337 
+    ML    43    41 6    46     4     6    21   279   569  -3.112  -0.628  -2.077 -11.291                 -2.134 -1.263 -2.877  1.687 
+    MR    44    41 6    46     4     5    20   278   568 -14.650  -0.813  -3.167  -1.646                  0.514  0.116 -0.095 -0.859 
+     D    45    41 6    46     4     4    20   277   567 -14.654  -6.196  -0.465  -1.932                 
+    IL    46    46 5    46     4     6    22   280   570  -0.973  -2.251  -1.833 -16.363                  0.000  0.000  0.000  0.000 
+    IR    47    47 6    47     3     5    20   278   568  -1.658  -1.541  -1.558                          0.000  0.000  0.000  0.000 
+                                             [ MATL    9 ]     21      - U - - -
+    ML    48    47 6    50     3     5    20   278   567  -5.790  -0.050  -5.953                         -0.331 -3.659 -2.094  1.532 
+     D    49    47 6    50     3     3    18   276   565 -19.786  -3.632  -0.121                         
+    IL    50    50 3    50     3     6    21   279   568  -1.092  -0.925  -7.854                          0.000  0.000  0.000  0.000 
+                                             [ MATL   10 ]     25      - A - - -
+    ML    51    50 3    53     2     4    19   277   566  -6.093  -0.021                                  1.474 -2.291 -0.205 -2.740 
+     D    52    50 3    53     2     3    18   276   565 -18.227  -0.000                                 
+    IL    53    53 3    53     2     4    20   277   567  -1.997  -0.416                                  0.000  0.000  0.000  0.000 
+                                             [ BIF    11 ]      -      - - - - -
+     B    54    53 3   121    55     3    18   276   565                                                 
+                                             [ BEGR   41 ]      -      - - - - -
+     S    55    54 1    56     3     0     0   243   533 -22.369  -0.017  -6.388                         
+    IL    56    56 2    56     3     1     1   249   539  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   42 ]    124      - A - - -
+    ML    57    56 2    59     3     1     1   242   532 -22.352  -0.240  -2.707                          1.309 -1.346 -1.848 -0.233 
+     D    58    56 2    59     3     0     0   270   559 -17.400 -11.266  -0.001                         
+    IL    59    59 3    59     3     1     1   235   525  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   43 ]    125      - a - - -
+    ML    60    59 3    62     3     1     1   202   492  -6.328  -0.021  -9.023                          0.586 -2.057  0.570 -0.368 
+     D    61    59 3    62     3     0     0   270   559  -0.042  -5.201  -9.702                         
+    IL    62    62 3    62     3     1     1   270   560  -0.092  -6.058  -4.423                          0.000  0.000  0.000  0.000 
+                                             [ MATL   44 ]    161      - A - - -
+    ML    63    62 3    65     3     1     1    73   142  -1.932  -0.457  -6.701                          1.158 -2.192 -0.369 -0.366 
+     D    64    62 3    65     3     0     0    70   139  -2.819  -1.028  -1.442                         
+    IL    65    65 3    65     3     1     1    73   142  -4.073  -0.127  -5.341                          0.000  0.000  0.000  0.000 
+                                             [ MATL   45 ]    164      - U - - -
+    ML    66    65 3    68     5     1     1    72   141 -21.209  -0.009 -10.814  -9.575  -7.955         -0.682  0.132 -3.020  1.109 
+     D    67    65 3    68     5     0     0    64   132 -17.745  -4.639  -5.193  -0.431  -2.392         
+    IL    68    68 3    68     5     1     1    72   140  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   46 ]    165    230 g c - -
+    MP    69    68 3    73     6     2     2    71   140  -7.837  -4.380  -0.097  -8.601  -8.745  -6.999 -3.731 -5.805 -7.971  2.370 -7.342 -6.261  1.299 -5.004 -8.453  2.576 -8.778 -0.450  0.365 -5.426 -2.709 -4.063 
+    ML    70    68 3    73     6     1     1    63   131 -14.302  -8.487  -7.423  -2.962  -8.903  -0.216  1.775 -5.129 -1.102 -3.603 
+    MR    71    68 3    73     6     1     1    63   132 -19.249 -12.305  -5.939 -11.369  -2.433  -0.326 -1.687  1.770 -3.739 -2.294 
+     D    72    68 3    73     6     0     0    61   129 -20.260 -18.958 -14.755 -10.963  -6.432  -0.018 
+    IL    73    73 5    73     6     1     1    70   139 -11.065  -0.003  -9.246 -12.983 -13.760 -13.420  0.000  0.000  0.000  0.000 
+    IR    74    74 6    74     5     1     1    69   138  -3.521  -0.434  -9.824  -5.351  -2.768          0.000  0.000  0.000  0.000 
+                                             [ MATP   47 ]    167    227 a u - -
+    MP    75    74 6    79     6     2     2    69   138  -7.738  -6.795  -0.034  -9.001  -7.793  -8.239 -4.490 -3.966 -8.398  1.938 -4.265 -6.096  1.369 -6.069 -8.004  1.917 -6.900  0.179  1.671 -4.954 -0.367 -1.059 
+    ML    76    74 6    79     6     1     1    66   134  -2.927 -14.962  -6.520  -2.571  -8.153  -0.544 -1.168 -0.568  1.349 -1.588 
+    MR    77    74 6    79     6     1     1    66   134 -17.319 -16.048  -6.230  -7.385  -0.359  -2.314  0.374 -1.189  0.304  0.044 
+     D    78    74 6    79     6     0     0    61   129 -22.429 -21.128  -5.934  -6.731  -9.746  -0.039 
+    IL    79    79 5    79     6     1     1    68   137 -11.251  -1.474  -0.834  -3.669 -13.945 -13.605  0.000  0.000  0.000  0.000 
+    IR    80    80 6    80     5     1     1    68   137  -1.653  -0.613 -15.513  -5.154 -14.786          0.000  0.000  0.000  0.000 
+                                             [ MATP   48 ]    169    224 g c - -
+    MP    81    80 6    85     6     2     2    67   136  -4.718  -6.996  -0.127  -7.319  -7.207  -5.310 -6.186 -3.823 -7.170  2.112 -4.328 -5.168  1.420 -5.926 -7.470  2.137 -7.575 -0.636  1.705 -5.233 -1.950 -2.203 
+    ML    82    80 6    85     6     1     1    68   137  -8.659 -15.234  -2.242  -1.242  -6.955  -1.492  0.784 -1.192  0.126 -0.416 
+    MR    83    80 6    85     6     1     1    65   133 -17.520  -4.692  -4.741 -10.494  -0.392  -2.631  0.204 -1.533 -0.573  0.872 
+     D    84    80 6    85     6     0     0    60   128 -22.538 -21.237  -8.000  -8.568 -10.713  -0.010 
+    IL    85    85 5    85     6     1     1    67   136  -1.779  -2.089  -1.289  -5.091  -5.454  -6.358  0.000  0.000  0.000  0.000 
+    IR    86    86 6    86     5     1     1    66   135  -2.442  -0.501 -16.198  -3.749  -4.842          0.000  0.000  0.000  0.000 
+                                             [ MATP   49 ]    173    221 G C - -
+    MP    87    86 6    91     6     2     2    65   133  -7.614  -6.980  -0.287  -5.270  -6.170  -2.974 -5.679 -2.766 -6.270  1.870 -4.483 -6.595 -0.216 -7.447 -5.014  3.258 -8.329 -2.736  0.272 -7.520 -3.005 -2.721 
+    ML    88    86 6    91     6     1     1    69   138  -5.806 -16.612  -4.430  -0.774  -9.894  -1.516  0.725 -1.223  0.171 -0.334 
+    MR    89    86 6    91     6     1     1    65   132 -17.997  -4.078  -3.829  -3.851  -0.668  -2.543  0.969 -1.987 -0.868  0.313 
+     D    90    86 6    91     6     0     0    60   128 -22.979 -21.677  -8.255  -5.024  -4.243  -0.131 
+    IL    91    91 5    91     6     1     1    69   138 -11.231  -3.520  -1.108  -1.157 -13.926 -13.586  0.000  0.000  0.000  0.000 
+    IR    92    92 6    92     5     1     1    64   132  -1.614  -0.914 -15.304  -3.564  -4.108          0.000  0.000  0.000  0.000 
+                                             [ MATP   50 ]    175    218 G C - -
+    MP    93    92 6    97     4     2     2    62   131  -4.818  -6.627  -0.129  -4.644                 -4.181 -1.146 -5.744  0.562 -1.492 -2.529 -1.027 -3.125 -5.290  3.564 -6.293 -2.648 -0.921 -6.385 -2.499 -3.007 
+    ML    94    92 6    97     4     1     1    70   139  -1.257  -3.939  -1.157  -3.879                  0.736 -0.517 -0.433 -0.160 
+    MR    95    92 6    97     4     1     1    63   128  -8.257  -1.858  -2.838  -0.783                  0.661  0.072 -1.192 -0.105 
+     D    96    92 6    97     4     0     0    57   124  -7.166  -4.402  -2.137  -0.477                 
+    IL    97    97 5    97     4     1     1    73   141  -0.394  -4.419  -2.469  -6.394                  0.000  0.000  0.000  0.000 
+    IR    98    98 6    98     3     1     1    66   131  -0.407  -2.495  -3.871                          0.000  0.000  0.000  0.000 
+                                             [ MATL   51 ]    184      - U - - -
+    ML    99    98 6   101     3     1     1    50   107  -3.965  -0.109  -6.803                         -1.283 -1.476 -3.545  1.653 
+     D   100    98 6   101     3     0     0    42    96  -8.804  -1.192  -0.836                         
+    IL   101   101 3   101     3     1     1    57   114  -0.468  -1.871  -8.196                          0.000  0.000  0.000  0.000 
+                                             [ MATL   52 ]    193      - U - - -
+    ML   102   101 3   104     3     1     1    42    91 -22.172  -0.016  -6.482                         -1.677 -2.582 -1.761  1.689 
+     D   103   101 3   104     3     0     0    39    88 -20.816  -3.023  -0.189                         
+    IL   104   104 3   104     3     1     1    43    92  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   53 ]    194      - c - - -
+    ML   105   104 3   107     3     1     1    41    90 -22.182  -0.011  -7.050                          0.491  0.649 -1.993 -0.368 
+     D   106   104 3   107     3     0     0    38    87 -20.747  -2.466  -0.288                         
+    IL   107   107 3   107     3     1     1    42    91  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   54 ]    195      - A - - -
+    ML   108   107 3   110     3     1     1    40    89  -4.746  -0.074  -6.279                          1.250 -2.137  0.039 -1.448 
+     D   109   107 3   110     3     0     0    37    86  -8.366  -1.326  -0.741                         
+    IL   110   110 3   110     3     1     1    42    92  -0.761  -1.375  -5.352                          0.000  0.000  0.000  0.000 
+                                             [ MATL   55 ]    201      - A - - -
+    ML   111   110 3   113     3     1     1    39    88 -22.253  -0.042  -5.138                          1.747 -2.029 -3.513 -1.682 
+     D   112   110 3   113     3     0     0    36    85 -20.089  -2.337  -0.318                         
+    IL   113   113 3   113     3     1     1    39    89  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   56 ]    202      - a - - -
+    ML   114   113 3   116     3     1     1    38    87  -4.226  -0.246  -3.273                          0.806 -0.383 -0.814 -0.126 
+     D   115   113 3   116     3     0     0    35    84  -5.192  -3.461  -0.181                         
+    IL   116   116 3   116     3     1     1    44    94  -0.540  -1.788  -5.450                          0.000  0.000  0.000  0.000 
+                                             [ MATL   57 ]    210      - U - - -
+    ML   117   116 3   119     2     1     1     1     1       *   0.000                                 -1.245 -0.591 -2.882  1.474 
+     D   118   116 3   119     2     0     0     0     0       *   0.000                                 
+    IL   119   119 3   119     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
+                                             [ END    58 ]      -      - - - - -
+     E   120   119 3    -1     0     0     0     0     0                                                 
+                                             [ BEGL   12 ]      -      - - - - -
+     S   121    54 1   122     1     0     8    66   104   0.000                                         
+                                             [ BIF    13 ]      -      - - - - -
+     B   122   121 1   123   167     0     8    66   104                                                 
+                                             [ BEGL   14 ]      -      - - - - -
+     S   123   122 1   124     4     0     0    47    85  -0.133  -6.997  -4.311  -5.073                 
+                                             [ MATP   15 ]     28     73 G C - -
+    MP   124   123 1   128     6     2     2    47    85  -7.807 -22.036  -0.028  -8.138  -7.188  -7.781 -3.632 -6.683 -4.872  0.620 -4.756 -7.736 -0.205 -5.208 -2.409  3.297 -5.472  1.293 -0.616 -7.417 -4.984 -2.157 
+    ML   125   123 1   128     6     1     1    43    82 -16.110 -16.456  -3.673  -0.656 -10.705  -1.803 -0.303  0.667 -0.572 -0.107 
+    MR   126   123 1   128     6     1     1    43    82 -19.329  -3.375  -3.100  -8.344  -0.526  -3.483  0.541 -0.686 -0.573  0.323 
+     D   127   123 1   128     6     0     0    39    77 -21.180 -19.878  -7.245  -6.368  -6.137  -0.048 
+    IL   128   128 5   128     6     1     1    46    84 -11.060 -11.323  -0.002 -12.978 -13.755 -13.415  0.000  0.000  0.000  0.000 
+    IR   129   129 6   129     5     1     1    43    81 -10.425  -8.512 -13.936  -0.005 -13.209          0.000  0.000  0.000  0.000 
+                                             [ MATP   16 ]     30     71 c g - -
+    MP   130   129 6   134     6     2     2    45    83  -6.867  -8.683  -0.031  -7.692  -8.988  -8.148 -5.475 -2.767 -7.590 -1.334 -3.792 -6.095  2.898 -9.094 -8.120  0.565 -9.263 -4.920  2.610 -2.978 -3.563 -4.236 
+    ML   131   129 6   134     6     1     1    42    81 -16.265 -16.611  -4.089  -0.350 -16.461  -2.676  0.241  0.750 -1.545 -0.332 
+    MR   132   129 6   134     6     1     1    41    80 -19.215  -4.580  -4.427  -7.688  -0.909  -1.417  1.153 -1.533 -0.099 -1.007 
+     D   133   129 6   134     6     0     0    39    77 -21.596 -20.294  -6.937  -6.120  -2.477  -0.326 
+    IL   134   134 5   134     6     1     1    45    83  -1.446 -12.910  -0.926  -3.231 -15.342 -15.002  0.000  0.000  0.000  0.000 
+    IR   135   135 6   135     5     1     1    44    82 -10.198  -0.002 -13.709 -11.877 -12.983          0.000  0.000  0.000  0.000 
+                                             [ MATP   17 ]     33     69 u a - -
+    MP   136   135 6   140     6     2     2    43    81  -7.845 -22.016  -0.030  -8.856  -7.308  -6.974 -1.794 -3.523 -7.483  1.760 -2.391 -3.880  0.992 -7.971 -7.094  0.749 -7.756 -4.164  2.982 -4.932 -1.776 -7.144 
+    ML   137   135 6   140     6     1     1    41    80 -16.876 -17.222  -1.637  -1.017  -9.183  -2.453 -0.207  0.886 -0.351 -0.993 
+    MR   138   135 6   140     6     1     1    40    79 -18.748  -3.089  -4.284  -9.065  -0.767  -2.050  1.485 -0.980 -3.106 -0.790 
+     D   139   135 6   140     6     0     0    37    76 -22.031 -20.730  -6.055  -4.898  -3.296  -0.235 
+    IL   140   140 5   140     6     1     1    42    81 -11.003 -11.266  -0.002 -12.921 -13.697 -13.357  0.000  0.000  0.000  0.000 
+    IR   141   141 6   141     5     1     1    42    81 -10.131  -0.002 -13.643 -11.810 -12.916          0.000  0.000  0.000  0.000 
+                                             [ MATP   18 ]     35     67 u a - -
+    MP   142   141 6   146     4     2     2    41    80  -6.821  -8.744  -0.051  -5.421                  0.430 -0.936 -2.720  1.073 -2.427 -3.268 -0.677 -4.440  1.082 -1.213 -2.758 -0.987  2.437 -3.297  0.861 -1.398 
+    ML   143   141 6   146     4     1     1    40    78  -2.881 -13.783  -0.833  -1.723                 -0.363  0.739 -0.166 -0.595 
+    MR   144   141 6   146     4     1     1    38    76 -16.653  -6.619  -2.688  -0.261                  0.349  0.245 -0.472 -0.287 
+     D   145   141 6   146     4     0     0    37    75 -17.692 -17.373  -2.437  -0.295                 
+    IL   146   146 5   146     4     1     1    41    80 -11.585  -0.507  -1.758 -14.754                  0.000  0.000  0.000  0.000 
+    IR   147   147 6   147     3     1     1    41    79  -1.654  -0.728  -3.671                          0.000  0.000  0.000  0.000 
+                                             [ MATL   19 ]     37      - A - - -
+    ML   148   147 6   150     3     1     1    39    78 -22.213  -0.054  -4.760                          1.772 -3.572 -2.262 -1.778 
+     D   149   147 6   150     3     0     0    35    74 -20.502  -4.588  -0.061                         
+    IL   150   150 3   150     3     1     1    40    78  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   20 ]     38      - A - - -
+    ML   151   150 3   153     3     1     1    38    77 -22.166  -0.337  -2.263                          1.183 -2.291 -0.084 -0.783 
+     D   152   150 3   153     3     0     0    35    73 -20.860  -4.798  -0.053                         
+    IL   153   153 3   153     3     1     1    39    78  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   21 ]     39      - u - - -
+    ML   154   153 3   156     3     1     1    38    76  -1.016  -1.408  -2.957                          0.183 -0.511 -2.252  0.966 
+     D   155   153 3   156     3     0     0    35    73  -7.670  -1.093  -0.926                         
+    IL   156   156 3   156     3     1     1    37    76  -1.130  -2.017  -1.757                          0.000  0.000  0.000  0.000 
+                                             [ MATL   22 ]     48      - G - - -
+    ML   157   156 3   159     3     1     1    36    75 -21.537  -0.028  -5.681                          0.049 -2.051  1.266 -1.649 
+     D   158   156 3   159     3     0     0    31    69 -22.598  -4.224  -0.079                         
+    IL   159   159 3   159     3     1     1    37    75  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   23 ]     49      - G - - -
+    ML   160   159 3   162     3     1     1    35    74  -0.450  -1.980  -6.111                         -0.853 -1.501  1.260 -0.518 
+     D   161   159 3   162     3     0     0    29    68  -3.864  -0.168  -4.589                         
+    IL   162   162 3   162     3     1     1    35    73  -0.695  -1.392  -9.853                          0.000  0.000  0.000  0.000 
+                                             [ MATL   24 ]     64      - A - - -
+    ML   163   162 3   165     2     1     1     1     1       *   0.000                                  1.640 -2.773 -2.865 -0.736 
+     D   164   162 3   165     2     0     0     0     0       *   0.000                                 
+    IL   165   165 3   165     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
+                                             [ END    25 ]      -      - - - - -
+     E   166   165 3    -1     0     0     0     0     0                                                 
+                                             [ BEGR   26 ]      -      - - - - -
+     S   167   122 1   168     3     0     4    39    67  -7.782  -0.028  -6.063                         
+    IL   168   168 2   168     3     1     5    40    68  -9.287  -0.003 -11.987                          0.000  0.000  0.000  0.000 
+                                             [ MATL   27 ]     75      - A - - -
+    ML   169   168 2   171     5     1     4    39    67  -4.607  -0.068  -8.167  -9.579 -13.608          1.122 -2.605  0.258 -1.108 
+     D   170   168 2   171     5     0     1    39    67  -6.900  -1.172  -8.611  -1.304  -2.834         
+    IL   171   171 3   171     5     1     6    41    68  -1.498  -0.913 -15.790  -3.120 -16.896          0.000  0.000  0.000  0.000 
+                                             [ MATP   28 ]     79    123 u a - -
+    MP   172   171 3   176     6     2     6    38    65  -6.420  -6.396  -0.035 -13.960 -10.665 -14.411 -1.691 -2.217 -4.523  1.501 -1.875 -4.608  1.544 -3.867 -1.457  0.400 -8.823 -0.175  2.531 -4.378 -1.063 -1.239 
+    ML   173   171 3   176     6     1     2    36    63 -14.935 -15.281  -0.568  -1.648  -7.331 -12.660  0.341  1.414 -4.924 -4.840 
+    MR   174   171 3   176     6     1     3    40    68  -4.228  -0.954  -3.079 -16.247  -1.687  -9.314 -1.434 -1.134 -2.002  1.548 
+     D   175   171 3   176     6     0     0    38    66 -17.412 -16.111  -1.615  -5.098  -1.043  -2.653 
+    IL   176   176 5   176     6     1     3    39    67  -1.698  -2.564  -0.976  -6.120 -15.869 -15.529  0.000  0.000  0.000  0.000 
+    IR   177   177 6   177     5     1     5    40    68  -2.670  -1.244 -16.367  -1.249 -15.640          0.000  0.000  0.000  0.000 
+                                             [ MATP   29 ]     82    120 u a - -
+    MP   178   177 6   182     6     2     7    35    63  -7.010  -7.091  -0.022 -14.742 -12.091 -21.592 -3.324 -3.360 -6.675  1.863 -5.347 -8.036  1.618 -4.877 -3.140  0.297 -9.861 -0.718  2.685 -6.025 -1.328 -2.132 
+    ML   179   177 6   182     6     1     1    32    57 -13.714 -14.060  -3.147  -2.524  -7.034  -0.503 -2.357 -2.654 -2.320  1.785 
+    MR   180   177 6   182     6     1     4    39    67  -1.423 -16.513  -1.572 -16.492  -1.782 -14.705  1.180 -0.005 -3.676 -0.602 
+     D   181   177 6   182     6     0     0    32    56 -15.018 -13.716  -6.383  -5.325  -0.556  -1.823 
+    IL   182   182 5   182     6     1     7    40    68  -0.950  -4.052  -1.244 -15.814 -16.590 -16.250  0.000  0.000  0.000  0.000 
+    IR   183   183 6   183     5     1     6    35    60  -1.567  -0.594 -15.409 -13.577 -14.682          0.000  0.000  0.000  0.000 
+                                             [ MATP   30 ]     86    117 a u - -
+    MP   184   183 6   188     6     2     5    33    57  -5.667  -7.907  -0.036 -17.070  -9.926 -21.610 -3.182 -2.813 -11.164  2.653 -6.296 -7.311 -0.526 -8.635 -5.656  2.308 -8.127 -1.447  1.691 -7.145 -4.326 -3.119 
+    ML   185   183 6   188     6     1     2    31    56 -11.443 -11.789  -0.253  -2.783 -11.639  -6.080 -0.612 -2.769  1.424 -0.956 
+    MR   186   183 6   188     6     1     2    32    57  -3.813 -14.874  -1.139 -14.852  -1.080  -9.270  0.802  0.388 -3.727 -0.197 
+     D   187   183 6   188     6     0     0    30    52 -16.512 -15.211 -11.008  -7.148  -3.920  -0.110 
+    IL   188   188 5   188     6     1     6    34    59  -2.162  -1.675  -1.110 -15.631 -16.408 -16.068  0.000  0.000  0.000  0.000 
+    IR   189   189 6   189     5     1     6    33    58  -1.288  -0.760 -16.018 -14.186 -15.292          0.000  0.000  0.000  0.000 
+                                             [ MATP   31 ]     89    114 g c - -
+    MP   190   189 6   194     6     2     5    30    55  -5.827  -9.315  -0.028 -18.308 -13.376 -21.613 -6.482 -3.441 -10.705  2.031 -1.733 -5.240  0.879 -4.688 -6.159  2.963 -7.327 -0.287 -0.706 -4.135 -3.849 -2.129 
+    ML   191   189 6   194     6     1     1    28    51  -9.166  -9.513  -0.949  -1.535  -9.362  -2.918  0.385 -1.120 -0.141  0.408 
+    MR   192   189 6   194     6     1     2    30    52 -15.570  -1.894  -1.030 -14.278  -2.053 -12.491 -4.456 -5.354 -4.331  1.956 
+     D   193   189 6   194     6     0     0    30    52 -16.420 -15.118  -7.664 -11.597  -0.055  -4.948 
+    IL   194   194 5   194     6     1     5    34    59  -1.079  -1.924  -1.927 -16.006 -16.782 -16.442  0.000  0.000  0.000  0.000 
+    IR   195   195 6   195     5     1     4    29    52  -1.423  -0.673 -15.828 -13.996 -15.102          0.000  0.000  0.000  0.000 
+                                             [ MATP   32 ]     93    111 a u - -
+    MP   196   195 6   200     4     2     4    26    49  -6.013  -9.285  -0.025 -14.885                 -3.172 -1.061 -7.168  2.398 -3.873 -1.172  1.626 -3.713 -7.576  1.563 -8.679 -1.478  1.186 -5.013 -0.574 -2.650 
+    ML   197   195 6   200     4     1     1    26    49  -5.242  -5.424  -0.162  -4.154                 -0.318 -0.303  0.714 -0.420 
+    MR   198   195 6   200     4     1     1    30    52  -0.963 -11.764  -2.476  -1.704                 -4.116  0.438 -5.638  1.360 
+     D   199   195 6   200     4     0     0    24    46  -7.241  -6.923  -0.708  -1.423                 
+    IL   200   200 5   200     4     1     4    29    52  -1.603  -0.601  -6.474 -16.152                  0.000  0.000  0.000  0.000 
+    IR   201   201 6   201     3     1     3    27    50  -1.180  -0.840 -14.794                          0.000  0.000  0.000  0.000 
+                                             [ MATL   33 ]     96      - C - - -
+    ML   202   201 6   204     3     1     3    17    33  -6.896  -0.012 -21.022                         -3.406  1.104 -4.486  0.775 
+     D   203   201 6   204     3     0     0    13    31 -13.250  -0.046  -4.989                         
+    IL   204   204 3   204     3     1     1    20    36  -1.669  -0.545 -13.412                          0.000  0.000  0.000  0.000 
+                                             [ MATL   34 ]     99      - U - - -
+    ML   205   204 3   207     3     1     2     9    25 -22.369  -0.000 -21.023                         -7.425 -2.858 -7.090  1.944 
+     D   206   204 3   207     3     0     0    16    34  -8.367  -0.236  -2.759                         
+    IL   207   207 3   207     3     1     1    22    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   35 ]    100      - u - - -
+    ML   208   207 3   210     3     1     2     8    11  -7.992  -0.006 -21.023                         -4.305 -2.017  0.799  0.973 
+     D   209   207 3   210     3     0     0     7    10  -6.174  -1.687  -0.566                         
+    IL   210   210 3   210     3     1     1     8    11  -9.077  -0.003 -11.777                          0.000  0.000  0.000  0.000 
+                                             [ MATL   36 ]    102      - c - - -
+    ML   211   210 3   213     3     1     1     7    10  -7.912  -0.006 -21.023                         -0.103  0.522 -0.848  0.108 
+     D   212   210 3   213     3     0     0     6     9  -6.174  -1.687  -0.566                         
+    IL   213   213 3   213     3     1     1     7    10  -9.157  -0.003 -11.857                          0.000  0.000  0.000  0.000 
+                                             [ MATL   37 ]    104      - u - - -
+    ML   214   213 3   216     3     1     1     5     9  -7.963  -0.006 -17.491                         -0.061 -0.704 -0.818  0.896 
+     D   215   213 3   216     3     0     0     5     8  -6.174  -1.687  -0.566                         
+    IL   216   216 3   216     3     1     1     5     8  -9.106  -0.003 -11.806                          0.000  0.000  0.000  0.000 
+                                             [ MATL   38 ]    106      - A - - -
+    ML   217   216 3   219     3     1     1     4     7  -7.944  -0.006 -13.373                          1.686 -7.611 -0.422 -5.044 
+     D   218   216 3   219     3     0     0     3     6  -7.170  -0.612  -1.562                         
+    IL   219   219 3   219     3     1     1     4     7  -9.125  -0.003 -11.825                          0.000  0.000  0.000  0.000 
+                                             [ MATL   39 ]    108      - A - - -
+    ML   220   219 3   222     2     1     1     1     1       *   0.000                                  1.470 -1.064 -1.364 -1.461 
+     D   221   219 3   222     2     0     0     0     0       *   0.000                                 
+    IL   222   222 3   222     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
+                                             [ END    40 ]      -      - - - - -
+     E   223   222 3    -1     0     0     0     0     0                                                 
+//
+HMMER3/f [3.1b3 | July 2016]
+NAME  tRNA
+LENG  70
+MAXL  1400
+ALPH  RNA
+RF    no
+MM    no
+CONS  yes
+CS    yes
+MAP   yes
+DATE  Wed Jul 11 20:38:40 2018
+COM   [1] /work/berntm/progz/infernal-1.1.2/src//cmbuild -F metazoa/cleaned/tRNA.cm metazoa/cleaned/tRNA.stk
+NSEQ  82262
+EFFN  326.106750
+CKSUM 1064118658
+STATS LOCAL MSV       -9.4496  0.74584
+STATS LOCAL VITERBI  -10.6673  0.74584
+STATS LOCAL FORWARD   -2.0642  0.74584
+HMM          A        C        G        U   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28980  1.50226  1.45061  1.31819
+          1.38629  1.38629  1.38629  1.38629
+          6.25482  0.00202  9.25056  0.00019  8.55554  0.00000        *
+      1   1.19127  1.83831  0.86437  2.15622      2 g - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.00074 13.60912  7.20496  1.46634  0.26236  1.09861  0.40547
+      2   0.78607  2.33202  1.39950  1.60669      3 a - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.00963  5.45430  5.23929  0.00057  7.47039  2.51915  0.08396
+      3   1.20945  1.74530  1.31655  1.35098      5 a - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.00990  4.69609  7.22995  0.39616  1.11749  3.64952  0.02635
+      4   0.94846  2.19403  1.46082  1.31248      8 a - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.01294  4.59434  5.89692  0.34315  1.23625  4.36021  0.01286
+      5   0.84906  2.13998  1.61838  1.36139     11 a - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.01552  4.31348  6.20688  0.48858  0.95061  2.29461  0.10625
+      6   1.11593  1.98015  1.46153  1.19581     14 a - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.01696  4.37118  5.47689  0.31355  1.31249  3.06487  0.04778
+      7   1.23995  2.97197  0.81409  1.53083     17 g - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.07171  4.25504  2.90038  0.71219  0.67446  0.76783  0.62366
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+//