Mercurial > repos > iuc > mmseqs2_easy_linclust_clustering
changeset 1:e6c5f120f010 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
| author | iuc |
|---|---|
| date | Thu, 27 Mar 2025 16:42:57 +0000 |
| parents | 9f6869226de1 |
| children | |
| files | tool-data/mmseqs2_database.loc.sample tool-data/mmseqs2_databases.loc.sample tool_data_table_conf.xml.sample |
| diffstat | 3 files changed, 14 insertions(+), 4 deletions(-) [+] |
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--- a/tool-data/mmseqs2_database.loc.sample Thu Mar 27 14:37:56 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,3 +0,0 @@ -#This is a sample file distributed with Galaxy that enables tools -#file has this format (white space characters are TAB characters) -#V4.0_2022-08-29 7025248 1.5 path/to/db
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/mmseqs2_databases.loc.sample Thu Mar 27 16:42:57 2025 +0000 @@ -0,0 +1,13 @@ +#This is a sample file distributed with Galaxy that enables tools +#to use a directory of metagenomics files. +#file has this format (white space characters are TAB characters) +# Tab separated with 6 columns: +# value : unique value used to generate the database path +# name: name of the database generate using the date and version of the mmseqs2 databases +# type : type of the database (aminoacid, nucleotide...) +# taxonomy : whether or not the database should contain taxonomy information +# path : final path to mmseqs2 databases on galaxy +# version : tool version to filter database version depending of the tool +# value, name, type, taxonomy, path, version +# eg. +#SILVA-15.6f452-10022025 SILVA 10022025 nucleotide yes ${__HERE__}/mmseqs2/SILVA 15.6f452
--- a/tool_data_table_conf.xml.sample Thu Mar 27 14:37:56 2025 +0000 +++ b/tool_data_table_conf.xml.sample Thu Mar 27 16:42:57 2025 +0000 @@ -2,6 +2,6 @@ <tables> <table name="mmseqs2_databases" comment_char="#"> <columns>value, name, type, taxonomy, path, version</columns> - <file path="tool-data/mmseqs2_databases.loc.sample"/> + <file path="tool-data/mmseqs2_databases.loc"/> </table> </tables>