# HG changeset patch
# User iuc
# Date 1743093790 0
# Node ID 9e47b28bff57ef611e55f8dee74854b8c3e6f1bd
# Parent  d0acde079e2e8509516687ba7bd3f5f2638245e4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521

diff -r d0acde079e2e -r 9e47b28bff57 tool-data/mmseqs2_database.loc.sample
--- a/tool-data/mmseqs2_database.loc.sample	Thu Mar 27 14:38:20 2025 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,3 +0,0 @@
-#This is a sample file distributed with Galaxy that enables tools
-#file has this format (white space characters are TAB characters)
-#V4.0_2022-08-29	7025248	1.5	path/to/db
diff -r d0acde079e2e -r 9e47b28bff57 tool-data/mmseqs2_databases.loc.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/mmseqs2_databases.loc.sample	Thu Mar 27 16:43:10 2025 +0000
@@ -0,0 +1,13 @@
+#This is a sample file distributed with Galaxy that enables tools
+#to use a directory of metagenomics files.  
+#file has this format (white space characters are TAB characters)
+# Tab separated with 6 columns:
+# value : unique value used to generate the database path
+# name: name of the database generate using the date and version of the mmseqs2 databases 
+# type : type of the database (aminoacid, nucleotide...)
+# taxonomy : whether or not the database should contain taxonomy information
+# path : final path to mmseqs2 databases on galaxy
+# version : tool version to filter database version depending of the tool
+# value, name, type, taxonomy, path, version
+# eg.
+#SILVA-15.6f452-10022025	SILVA 10022025	nucleotide	yes	${__HERE__}/mmseqs2/SILVA	15.6f452
diff -r d0acde079e2e -r 9e47b28bff57 tool_data_table_conf.xml.sample
--- a/tool_data_table_conf.xml.sample	Thu Mar 27 14:38:20 2025 +0000
+++ b/tool_data_table_conf.xml.sample	Thu Mar 27 16:43:10 2025 +0000
@@ -2,6 +2,6 @@
 <tables>
     <table name="mmseqs2_databases" comment_char="#">
         <columns>value, name, type, taxonomy, path, version</columns>
-        <file path="tool-data/mmseqs2_databases.loc.sample"/>
+        <file path="tool-data/mmseqs2_databases.loc"/>
     </table>
 </tables>