Mercurial > repos > iuc > modify_loom
changeset 12:c822c5c1feef draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/anndata/ commit 08ce25c9b0ae236d3c0c352119de9db6b56c2925
| author | iuc |
|---|---|
| date | Sat, 29 Mar 2025 07:36:12 +0000 |
| parents | a7b951572609 |
| children | |
| files | test-data/trimmed_barcode.tabular test-data/trimmed_gene.tabular test-data/trimmed_matrix.mtx |
| diffstat | 3 files changed, 9622 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/trimmed_barcode.tabular Sat Mar 29 07:36:12 2025 +0000 @@ -0,0 +1,1001 @@ +barcodes +CTGTCTCTTATA +TTGGCTTGCAAC +CCGGTCAATGCC +GTCACCGTGCCC +AATCGACATCTG +CCGGTGTCCTCA +CGTTTGGACAAT +GTCCCCGGACGC +TGCTAACACATT +GTCACGTCGACA +CTGAACCCGGCT +GCCCGCAGTGAG +AGCCACGAAATT +GCCGAACACGAT +TTCAAGGCATTC +TGTCCTTAGCCT +CGTTACGATGCC +CGAACACCCCAG +CTGTTCTTCGGC +TCAGAGTTATTT +CCATTCCCCTCG +CGTGCGCCCGTA +GTATAACTTGAT +AGAGTATTACTT +GCGATTCACCTC +TTTCAGACATTT +GGACCGCTGTTA +CCCTAGAGAGTT +CGTTGCTCGCAT +GAGTGCAGGACA +AGCGTACCTATT +GGTCAGTTTCCA +GCCAGTCTGTCC +CGTCAGTCCGAT +GACATTTGTGTA +GCTGTCCCTCGT +AGCCCTGGATTA +TTCTCTTAGCTA +TGCCCATACATC +AATGTCTTTATA +AGGTCGCTTTCA +TTATTCGCGGAG +ACTTTCACCTCT +GTTCCATTGAGC +GGAACTTCCTAG +TGATGGACGTAT +ACTCCGGCAGTG +ACTTTGATTGGA +GTCGTGAGGCCG +CTTTTCCATGAG +AGCTGGCGTATT +CACCGCATGGCC +CTCCCGGAAATT +CGGGCCGAACGC +GGATTCGAGGTG +TTGCGTACAGAT +GTCGCAGTCTGC +CTCACCTCGTTT +GGATGGGCATCG +CTGTTCCCGTTT +ATATCCCCGAGC +TTCTCGTTGCCG +AATGCTTGGAGC +CAGTTTATACGT +TCTGTTAGTCCC +TCCTCCGTCCAC +AACAATTCCGAG +CGCCGCTTGACG +CATAGCTCATAA +CGTCACGTAGCA +TCTATGCTGTTT +TTTGACACTCTC +TTCCAAATTCCC +ATGTTAGAGTAA +GTCACATAGCTC +CGACGTCGTGCT +GCTAATCAATCC +CGCTGAGCGAGT +GCGGTAGAGCAT +TGATTATTTTCT +AATCACCGCGCC +GTTTCTTGCGCC +AGCACATTCTGT +TAATTCGCCAAC +ATCTGTCATTTC +CGATTGTGAGAG +GGTTAGCATGCC +GCGCCTACTTAT +GTGTCTAGAGTC +GATATAATCCAG +TTGCGAATTCCA +AGCAAATCGTAC +CTAAACTACGTT +GGCCGTGGTCTA +CAGCTTTTGACC +GCGTGCGGTCCA +GATGATACGAAT +CGTCCTCTCGCG +GGCAGTTTTCTT +AACCTGTCTCTT +TGATTATTTTCA +GTCAGGTCTCTG +GATCCCAACTGG +ACAAAGTAGTCC +CACCCGTTCGCT +CAAAGCTATTCC +ATTGCATGGCCG +TATTTGTTCGTT +AACAGTTGCAAC +TGATTATTTTCG +TAGCACGACGTT +AGCCGGCGTCGT +ATATCGGCGGCA +AAAAGTCGCTGC +CCCAGGAACTAG +AATTTCTAGTGA +TGATTATTTTCC +GTCACTCACTCT +GACAACTAACCT +AATACCTCGGTC +AACAATTCCGAC +ATCAAGGTATTG +GTAGGAGGTCGT +AATGTTCCGTCG +TTACTGTTGCAA +TGGCGCTCTGAG +GCGAAAGAACAG +CATGTTACATTC +GAATTGTACCGT +GTCGCCATTTGC +GTCCCGCTGCCA +ACTATGACCACC +TCGCGTCTCTGT +TGGAGCTCTATG +TACTGAGTCCCA +GCGCGCGACCAA +CCGCCTTGTGGT +ATTGTTGCTTCA +AGATTGTAAGTA +CGACCGGTTTTT +GTTCGAGTTAAG +CAGATCGAACAT +GAAACAGAGATA +CGACGTTCGCCG +TCGTGCCATACG +GCCGTTTCTGCT +CAAATTGCCGGG +CGAGCCCGTTCT +CTTGCGCACACG +TGATTACTTGTT +CCGACAGTGAAC +TCTTGAGCATAG +CAGATGGATCAC +GGACGCCCAGCA +AACAATTCCGAT +TAACAGTTGGAA +TGGTAGAGTCTA +TTTCTCCTCGCT +ATGCCATTAATC +GTAATGCGTTCC +TGCCTTTCTTTC +GTCGTCTGGCGA +TTGTCAAACTTA +GGGAAACTTTGG +AGGATTTCTAGA +GGTTCCGGCGAT +GAGAATCCACAA +ATGACCGACGAA +GCCTCCAAACAC +GGCCGTTATTTC +GTTTTACCACAC +AGCCAGACACGC +ACCCTCCTGGAA +GCCTTGCAATGT +GTCGAGGTGCAG +GCCTTCTTTCAT +GAAGTCAATCCG +ATGACAGAACCA +CGAACCTCAAGA +AGAAGTCGTTTT +CTTTCAGCCAGT +TCCAATTACATC +TGCTGGTTGTCC +GCGATAGCGGCC +CCTTCATTTACC +GTCAAGAGGTAA +TACAATGCCAAA +GTCATCTCCTAA +TTAGAACACCTG +TTCATTCAGGCA +GATCACCTGACT +TGATTACTTGTC +GGAAAGTTGTTT +CGCAATCTCCTT +GTGACCCCCTTC +GCCCCCGTCAGC +CGTTTCTATTTG +ACTTCGGACGGC +GGCACACTCTCT +CAGTTCGCTACA +AACGAAGGTGAA +CGCCGGTTTAAG +CCGTTTCGACCC +ACGCGCAAGTCC +CCTGAAGCCTAC +GTTCACCTTGGC +ACCATGTGCCCG +GACCGCGTTCCC +CCTGTTGATCGG +CGGTTGACAGTT +ACATCATCTGTT +AACAACTTAAGA +GAGATTTCGAGG +GCCTTCTTTCAG +AACAATTCCGAA +GCAGTTTGGCCT +AGCGGTAGACGG +ATACTTCAGTCC +CCCTGTCGTTTA +TCCGACGCTCGC +GTGGAATACACC +TGTTACCAGTTG +AGGTTGGTTTCC +TACTTTGACAGT +GCCGCCGCGTCC +GGCCAAATTGCG +TATTGCCACGCT +GCCACTTTTCAT +TCACAGCGAAGG +GATAAATCAGAT +GCGAGCCTCAGA +ATTCCATGCTCC +GTTGCGTCTCCT +CTCTTTAACATC +TTGCATCGGTGA +GTGGTCGGGAAT +CCTTCGTTACTG +AGTAGCAGCCTT +AAACGTGCTTTC +CCATTTATCGGT +ACCTACACCCAA +ACCATACCCCGC +ATTAGCAGCGAG +GATTCCCAGTAC +GCCTTCTTTCAC +TTCTGTCCCTCA +AATCCGGCTGCC +GGGCTGCCAGAT +CGGATTTCTGCT +ACGGACTTTCTC +CTTGAGTTAGGG +CTTCCCACGATA +TAGCTCCCCCCA +CCCAGATCCATT +AGCACACAATTC +AAAAAAAAAAAA +TGGGAGACAGCA +ACGGCGCGCTGT +TCGCAGCAAACT +ACGCTGCAAATT +TGTTGGTATCCG +AGTTTAATTCTC +AGCTCTCGCTCC +AAACAATTTAAG +GCGGAACATTAA +TGATTACTTGTG +GCAAGAGACGGG +CATATTCCAATG +TTGACGGGCGGC +CACAAGATAGCC +GCCCGCTGCGCA +GTGCACCAACAC +GGTGCTCCTTGA +CGACTAGTTCAG +GTTCACTGTCAC +GCACTACCAGTT +ACCCTCGCGGAA +CGGACGACTTCT +TTCTAGAGGATA +TTAACATTGAGT +CATCTCATGCTC +GGCACGCAATGT +GGCAACTAGGTC +CAAGGAGTGATG +CGTGTTCGTCTC +GACTCCCATTTA +GCCTTCTTTCAA +CTCATTACTTGC +CGCAAACTCAAA +AGGGTAGGCAGC +GGCGTCTGATCG +TTATTTGCGCGC +GGAGCCATTGTA +GACACTTCAGGC +GTTCACCTATGT +TGACTGCCGATC +GCCCCATGTCGC +GGGCCGGTTCGC +CTTGCCCCATCA +TTAGAGAATGCG +CCCCATGATTTG +CAGCCACTTATG +CGGCTAATAGGT +CCGGGTCCGCTC +TATTTGCTCATC +GCTTTTTCGGTT +TTACCGCCTGTT +TCCACCCTTGCA +CTGTTTTGTCGC +GAATTTCGCATA +ATGTCGCCTGTG +TTAAGTTCATTA +CTCGGGTATGAC +CGGGACCCGGCG +ACTAAGAGTTGA +GGTTAGCGCCCT +CGAAAGTCTCCT +AGAGCAAGATTC +ATCACGGATTCC +TGCAATATAGCG +CTTCTATAAGCC +GTGCGCGGATGC +GTGTTAGTCCAC +TATTAATGACTG +CACAATCAGGAC +TAGACCCCACCC +TGGTGAGGTCCA +CAAGCCCATAGG +CGAACTTAAGAC +CGAACTTAACCA +GTGGCAATCATA +GACAATGAAATG +AGGCCATGACCT +TATCCTTCCGTG +TTTTCGAATTAA +AGTCCGCCAGGC +ACTGGATCCTGC +CTCGAATTAATT +TCTCAGCACCCT +GTGTAGTTATTC +TCTTTGGAAGTA +GGAGTGACGTGT +TTCGAGATCATC +GCCTATTGTTTC +GTGGAGATAGAC +CGATGACTTGAC +ACGTACGACCAA +ACTCGCATAGGT +ACGTACTTTTCC +GACAGGTCCCGC +CCCCAGTGACAT +GTGCCAGAGCCG +ATTATCGATCAG +CTCGTGAAAGTT +GCTCCCGGAATA +CCTACAGCTCAT +AACAAGCCGGTA +CAGACGACGTTA +GTTTTCTAAGGA +CATGCAACACTA +TGGCTTACGCGT +TGCCGCGGCCAG +GCGTAATTTGAG +GCTTAACGCTGC +TACTCAGGAATT +AACGCCCCGGTG +CTAAGGATTCGA +ATCCCACCCCTT +TCACCCCGCAAT +TTCCGGGTGGAA +CCCGGGAGTCAC +GACGCACAGGCG +TCCCTTGGCTGT +TCATAAGCATAT +TGAGTTAGCTTC +ATATTTATGCCG +TTCAAATCTCCA +CCGAAGGTTCTG +CCTATGCAGTTT +ATACAGTCGTGC +GCCGTCGAGCCA +TGCGCGTGTGTT +CGGTCGGTGCCG +AACCGACCTTAA +CCAACGGTTCCT +TTGGTGCTTCTC +GGGAACGATTGG +GCTAATCATCGT +GCGTGTCAACCA +TGCGCCATCATT +CCGAGATCGGGC +ATCTTCACGGCC +CAGTGGTGAGAC +GGCTGCCAGGGA +GTCATCTTATTG +GGTCCAGGAGCT +CGCCCTGACGTG +CCATGTGCCTTA +GCCAAGGCACGT +ACTTATTGCCCT +AATGCCCCACTA +TTTCTAGCCCTG +GTTCAACTATCG +CGCCCGTCCCGC +GGTCGCATCGCA +CGCCTTGCCCAC +TACAGTGTGCTG +TTGGATTTGGTT +TACCCCTAGGGT +ATGCTAAGCCGT +AGTTCCACTGAT +ATCCCCGAGTCG +ATTTGATGTAGA +CCCCAGCCCTTT +GAGTGTTGGTGC +CTTGCTACCGGC +GCCGCGTCCGAT +AGCCAAGCGGCG +GATTTTTCATTC +CCTGTGAGCTAT +ATCCGTCCAAAG +ATAAGCGCCTTG +CAATCCGGCCAA +ACTTGTTGGAAG +CTGTACTTCGAG +GGAGAAGATTAC +ATTGGCGTCACG +GGTGTAGCATGA +ATCGTCTACGCC +CCCAGTGTTCCT +GAGTTTTATGCC +ATGTTGGCGCAA +AGGTAGCATGAG +ACTCCGGACTAA +GGAATCCTAGCA +GATTGGCATCCG +ACGTTCGCCCAA +CGGATCCAAGAA +AGGCTGCCACGC +CTCACCACATTA +TCGTTTTATGAC +TGCAATCAGAGT +GCCGTACGGGTA +CGATCCTGGATA +TTAGCACGCCGT +ATCACCTAATAG +CGCCGATGAACT +CACTTGCTACGA +AGTCAGTGACAT +GAAACCTCACGA +CGTCCGTAGACG +ATGTTGGCTGAG +CACAACCCACCC +ATCACGACACGA +ACCATTCCTATC +ACGCAACTTAGA +ATCAAAAGAATG +TCCCAAGGGGTG +CGTCTATATCTG +GATAGGCGCTTT +TCCCAATATAAC +TTTCCTGTATTG +CCACCGCTCCCA +TAAGCAGGTTAA +CTCAATTGCGGA +TAAGTCGGCCAT +CTCGCCGAAGTG +TGGGGTGCACAC +TTATCTATGTCT +AAGCAAGTTTCG +CGTCAGGAGCTT +GCTGGTCGCCTA +TTGTTTCGGTTT +ATCTTATCGTCA +ATTGGCGTCACT +ACTTTGAATACA +CGCGTCAACGCA +TCGTACTGAGTT +AAGCGCTGGGGG +CATCACATCGCC +GAGGGATGTGGA +TATCCTGATCTA +GTAAGGTTTTTA +GATCGAAGTGGT +ATCACTAAGTGG +GCAACTTGTCTG +AATCTGTCCGTG +CCTCTACGCCCT +CGAACGATTTCC +GCCTGGAGTAGC +TGGTGTGGAGTT +TAGAGATGAATC +GCGCTCATCTAC +GCCACATGTTGC +TTAGTAGCATAG +AAAAGGCCCCTG +TCCCCAGTAACT +ATTGGCGTCACC +GGTTCATCATTT +TCCGCTAAGGTA +CTGGAGAAGTTA +TGCATACAGGTT +GAAAGATTATGA +CCGCGACGTGGA +CTAGTCGCGGAG +TTCCGCTCGTCG +TGATTACTTGTA +GAGGAGCAGCTA +GCATCTGGCTCG +ACCATGCGGACG +AACGTCATTTAT +CGCTTGCACTCG +TGGTCCCGCACT +CCGCGATCCCCT +ATACCTAAAGTA +TGCCCGTTCGAA +GCTCTCATTTAT +ATCTCGAACAGG +TGCCACGCCCGG +TACCCTAATGCT +TAAATCTTCTGA +TTTCTTAAATGC +CCCCTTGTCTAT +CGGACCTAGCAC +GCCACTTCTGAT +TGTCTTGGATTC +TCGTCCCCGGAG +ATCCCGCGTTTT +CGCCTTAAGCTG +TGATGTATTCCG +TTACAGAAGTTC +ATGAGACCTATT +CTTGTTGGTTCC +TGTCCATTGGGA +AATTCAAGCGAG +TGGGTTTCTGTA +GAGCTACCCGTG +CTGGTCACATGT +CGAAATGTTCAG +TTATTCCATTGC +TGCAGTAATGGT +ACGACCCATGGC +TCCGGGTTGTTT +GTCACATGTTTC +ACCGTGCTGCAG +CTGCTCGGCTAG +ATTGGCGTCACA +TCACGTTTACTG +CTAGCCCGAGAG +AGTCGTGATTCT +TTCAATGAGTCA +TTCCTAGGTCTA +GGCCCCAAGTGA +TCAAGTCATGGC +TGATAGCTCCTT +TACGTTATTGTT +ATTTTCCTGATC +ATCGACCGCCCA +AGTCAACCCGGA +AACGCGTATCCA +GTTGTATGGGCT +ATTGTTTTGGAC +TTCGCTTATTTC +CTGTTTCCAGCA +CTTACTTTCGTA +CACCACATTTTG +TCCTAGCTGGTA +AGTAGGCGGTTC +TGTCGAGCTTTT +CTCATATGGCCA +CATAATCGGTGT +TTTGACGGGGTA +TTTACAATTGAT +GGCCAAGCTCAT +ATCCTCGACTCC +TCCAAGTTCCAA +GTGGGAGCTCCG +TACATGATGTAC +GCGCCGAGGTTA +CCCCTAGCGGAT +TGGAGTAAAGAC +GCCTGATGTCGA +AAGTTGACGCGA +CGACGGTCCGGT +TCTTCTCCCCTC +ATCATGTAGAGG +TTATGGCATTGG +GCAGAGAATTGG +ACTAAGCAATCA +CCGTAATCTTTT +TCTCCGGAAGGG +ATTGCTGGAGAG +TAAACTATCTGC +CACCCACGTATG +TATAGACATCCA +CCTGCCCTTCCA +GTGCTGTTCGCT +TCGTTTTCGCTC +TCAAAATGCCCC +TTATGTCAAATT +CTGAGAACAAAG +GTGTGAGAGGCA +TCAATATAGTGT +GGAAAGAACGCC +TGAGGCCATTCA +ACCTGTCCGCTT +TCGCCATCTTAG +CCGGCTAAAAGC +TGTCGAACCTGT +CCCGTCTCAGAG +CTGGTTGGGGTT +TCTTGTTGCCGT +GGGGGCCCGACG +CATCGGTATGTG +CGCAACATGTAG +CAAGGCTGTAAC +GTACCAATATAC +TAGCCGCTTTCG +ACCCCTTATTTA +TTGCTCTCGCAA +CCGCGCGCTTGT +AACAGCTGTCTC +TGACCCGCCACA +ACCGACGAGGCG +CACAGCTATTGT +GAACAAGTCATT +AGTATGAGCCAG +CACCAATGGCTG +GGAGGCGAGTGA +GAGATTCAGCAG +CGTTTCCGTCCA +TCAGTCTAATCT +GACCAACCCGCG +TTTTCATTCTCG +CGCCGTTTCGCT +AGAACGACGACT +TTCCTCAACGCT +CAGCGACGATTA +CATGGGTCGACA +TTCGGCTCTAAC +ATACCCATTTTC +ATTCGACTAGTC +GAAGTTAGATCC +ACCAGACGGCGT +CAATTGCATATA +TTGCCGGTCTTG +TCACGTGTTCAA +CCAAGGCTATTG +ACCCCTATCTAA +GCGCGTAACCCC +GCGTGTGGCTCT +TGTGGGAGGACC +TAGGCTTAACAT +ATCCAGCATGGG +CCCGTATCCTCC +AACAAGGGACTT +CTCCCCAACGGG +GGTTGGAAGCCC +CGGCGATGCGCT +TGGTTAGTTGTC +GGTTGCTAGTTT +CTCCTATGTTTC +GGTGCCTCTACA +CGTCTCGGACAG +TTGCCCCTCGCG +CGCACAGAGTTT +CCCGCTTCCAAT +CTGCAAACGTCG +GTACCCCTCCCA +GGCATGGAGTGA +TTTTAAGCCGCT +ATCAGAGGCGTG +CTCGCATCCGTT +CGTTTGACGTAG +AGGTAGCATGAT +CAGGTTGTGTTC +CGATGCTGCAGG +GAATGTGAATCG +AGACGGAAGCTA +ATAACGTATTAC +CCATAGTCGCCT +CGGCAATGCTGT +CGAGGCCCCGTG +AAAGACAGGATA +CTCCCTCACGGA +TGCCACGCCCGC +CGCGTATTCTAG +GGTTGTATGTCT +GGTCAGATATCA +CGCTTGTTAAAA +TCAACCCTCCGT +AACCAGCATCCG +GAAGGTGTCTCC +ACACGCATCCAC +CTGTTAGTTTTT +GGTTGTCGCGGT +TGAATCGTGACA +TAACTAAGCGCC +TCCTGTCTCTTA +GTCACGTGGGAC +CCACCTGTGTAG +AAAGCGTAGCCT +AGTTCCCCAGGC +TTGCACCTGGCC +GCGCTTAACGGT +CGGCCCACGTCT +CCGTAAATGTGT +CTGACAGCTAGA +ATTGACCAATCC +AAACTGAACACA +CGTGGTTGGCAA +ACCATCGCGTTC +AGCAGAGCCTCC +GGTGTCTCGAAA +TTCACTTCTGCA +AAACGACCTTCA +TCCGGCCACCAG +TGAAGTGCAAAA +CGGTGAGTAACA +ATGACTTCTCTC +TCGGGGCCCCGC +ATGAATTAACTC +GCCCAAGGTCTG +TCAAAATGCCCT +ACCGTTAAGTCG +CCCAAAGGCGCG +CCTCGGTCCCTC +TCGGTCGAGTTG +TGTCCACGCAAG +GCTAACGTTCCT +GTTCGTCCGCTC +CACCGTGAGTTT +CAGAATCCCAAA +CGTTAGGTCATA +CGCAGCAAGTTG +GAGAATCGAAAG +TTCTTAGACCTT +CTTGTTCTGGCC +CGTCCCGCGTAG +TTAGTGACGCCC +AGTCAACTATAG +GCAGGCTTCTCT +CAGTTAGGCACC +GCTGTCCGGCGT +GAGTTCTCAGAC +CAATTGGACCTA +TTCCCCTCCTAA +CGTTCGGCGTGG +CCCTCTTTATGG +TGAGGAGGTCAA +TTAAGGGTCCTC +GTCATGTTTTTT +TGCGGGCCCTGC +GGGACCATAGAG +GCTCTGACGAGG +AGGTAGCATGAA +CTATGCGATTTA +ACATAATGCCAG +ATTCTTTGGTGC +AGAACCGGTAGT +TATGTCCGGCGC +CGTTTATTGGCT +ACGTCGTGGCGC +GGTGGAGGGTCT +CTTGAGCAGCCT +CCCGCATCCACC +TAAGTAGGCTGC +TGCCACGCCCGA +TATGAGCGCGTC +CCACCTTCGGCT +CAACGGGAGGGA +CAGTAACCCCAT +CTAAGCCGCTGG +GATGGTTAGTCC +CAACTCCTGCAG +AGACTACTGCAC +GAGTGCAAACGT +AGTGATTTAAAC +TTACCCGTCTGT +CATCAGCAGAGG +TGATTGCATAAG +TCTCAGATTAAT +TTTCTGGTCAGT +CGTAGCTTGCGC +TGTAATGGCTAG +CCAGCATCGGCC +GGCTGCCATGGC +CAGATCCGGTCA +CGTTAGTCCTAG +TGACCAATCCCT +CGACTTCTTTCC +GCCATCGGGTCG +TACCACAATATG +CGCAGCGTCGTC +AACGTCGGCGGT +CACAAACCCAAC +CGAATGGCACAG +GTTATTCAGTGA +CAACTTTTGCAC +TTCATTGGTTTG +CGTCAATCGTGC +AGTACCCCCTAC +GTTCTTTTGTCG +GGCGCTACTGTA +TGCCACGCCCGT +GGACAGAGTTGG +CCCGTATCCTCG +TCCTGGTCCTCG +CCTGAATGTGTT +ACTGGTATTGCC +GGCCCAGCTAGA +TGTCGATCCGAA +TGAAAGCGTGGC +TTCCTGACGCTT +AATCCGCAGATG +AGGTAGCATGAC +CCAACCGCTTTG +AGTTCCGGGCGC +TTTTTTTTACAT +CGACTTGCTTAA +GACTTGTAGATA +GGGCCGCTGATA +AAGAAACGGATA +TGACCAAAGCGC +GGTTAGTAAGAT +AGGTCCTTGGGG +CGGTCACTTTAG +TGCAGTAAAGAC +TTCAGGGACAAA +CGCCGCGCTGGA +TATGTCTTCTTT +CTAGCGCGCTTA +GTGTTACATTGA +TAGCAGTCATGC +AAAGAGCTTGCC +AGCACCCCCGGG +CAAGTTACCCAA +GCGTCGACTCGG +TGACAATAATAC +CTATAGTTCGTC +GTCCCACTCGCC +TAGTTGGCTAAG +ACTTGCGTCCCC +ACACGCCTTTTC +TCGTTCCCCAAT +GTCACCGAGTAA +AGCACCAACTGC +CTCACGATAGCT +AATCTGGACTTA +CCATAAGTGTCA +TAGCTCGAATGT +AACCCCTCTGCG +GTGGTGTAGTGA +CCCGTATCCTCT +AATTCCCAAGCA +AGATCATTAAGG +ACAGGACCGCTC +CGCCGCGTGCCC +CTTTTGACGCTG +CCATGGTCTCTT +TAATGCCACATG +GATGATCAAACC +ACCATTCAAGAG +AGTGCCGACAGT +AGTTCTCGCGCC +TCTGGTGGACAC +TCAAAATGCCCG +GACAGGTCTACC +CACAACCCGACC +AGCGAAGGTTTA +ACTTCGTCTGCT +ACTGTATCACCA +AGTTTTGAGCCA +GGACCACATAGT +GGCTGAACAACA +ATGGCATTGTCG +TCGTCAGCCCTT +CGTAGCCCTTGT +GATCGCTAGTTC +AGTCGCCGCGCG +CGTCCTATCGTT +AGACATTTGATC +CTCTTCTACTAA +ATCGAATAGGCA +GAGTGGTGTGAC +CATAGACACCAG +CTTGTCTGTGGA +CAAGGTTGTTCG +GCACTGAACATA +TCTCTCACCCCG +CGTGCTTATTGT +GCTACACAGGTA +TTTGCAGTCCAT +TAGTTGTGTCGG +GTTAGCATTCCG +TGAATTCGGCCG +CGCTAGTGGCTT +TAGCCGTGCGGG +ATCGAATAGGCT +CCATGGAGCCGA +ACCAGGACACGA +CTCAGCGATCCG +CCGTCCCTCGTG +ACGAAGTACGCC +TGCAGACGGGAA +CTCTGATATGGT +AGTGCCAATTGA +TTTCCCGTCGGA +ATCCATCGTTGA +ACGTTGATCTAG +TTGCGTGGTTTT +TATTTCTTACTT +ATCGAATAGGCG +TAGCAGGCGAGA +GTGGCAAGATCT +ATCCTATCTCCA +GTAAGTTTAGTC +TCTCCGGATACC +AGAATTGGTCAA +GACTGCTGGTAT +GCGACTTGACCG +TCCATTAAACCG +CTTTGCTGTGAG +GGTAAGTTCCCC +ATCACTTCTGGT +CCTATCAGGACT +TATGGTTGATTC +GTAAAATGGTGC +CTAACAAAGCGA +ACGCCACGAATA +TTTGGTCTACGC +GTCCCGTCGGTG +AAGCGTCCTTCC +GTTTCCGAGCAA +CGCAGAGCGACA +ATAGAAGGTTAG +ATTTGGGCGCCG +TACATGCTTCGG +TAGTTGACTTGA +TATTTTGTAGGA +TTCCTGACGCTA +GCGTGCCATCTC +CATAGCGATTTC +CCGCAGTGTGGC +TTTCAGAAGACA +AGCACCCTTTAC +CCTTGAATGGTT +GTAACCGGGCAG +GCAAGATTTTGG +TGAACATTACCG +CCTACTTTGAGA +TTTCAATAACGA +GCTGAGATGGGT +CTAAAGTGGCTA +GCGCAGGAGTGA +AAGGACCGCGAA +CTTCGTCAATCA +CTCTGGGAGTCT +CCTGCCTTGGAT +ATGCAATCGGAT +AGTGTGCGGCAA +TTGGATCATGCT +GCCACATACCCG +TCTCCGCTCACC +TGATTCCTGTCC +GACTGGCTCCAT +CACAGTATATAA +CGAGTAGGAGAC +AGGGCCGCGCTG +GAAACGGTTGTG +ACGGAGCCCGAT +TTATAGGCATCT +GTTTTGGCGCTG +GGGGGTTGCCTT +GCGTAATGGGTC +GTCTCAGTAAAA +CTCTTGGCGCTT +TTAAGCATGTAG +AGTAATCAGGCC +TAAATCCGTGAA +GTAGGCCAGCTA +AGAACCGAACGC +GCCACACTAGCT +TTGCCTGTTTTC +TTAACGTGATGT +GCGGTACGTGCG +CCCTCTGCTCGA +AAACCTACATAG +CGAAATGCACTA +AAGACCTCTAGA +TGAGGCGCCCGT +CAAACACCTGCG +TTTGTCCAGGTA +TTCGGGCGTCGT +CCATCGGCTCTG +TGTAATGCTATC +TGAATTCGGCCT +AAACCTACATAT +ATTCAGCACAAC +GAGGTGAGAAGA
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/trimmed_gene.tabular Sat Mar 29 07:36:12 2025 +0000 @@ -0,0 +1,501 @@ +gene_id symbol mito +ENSMUSG00000051951 Xkr4 False +ENSMUSG00000102851 Gm18956 False +ENSMUSG00000103147 Gm7341 False +ENSMUSG00000025900 Rp1 False +ENSMUSG00000102948 Gm6101 False +ENSMUSG00000025902 Sox17 False +ENSMUSG00000102269 Gm7357 False +ENSMUSG00000103003 Gm38076 False +ENSMUSG00000102735 Gm7369 False +ENSMUSG00000098104 Gm6085 False +ENSMUSG00000102175 Gm6119 False +ENSMUSG00000103265 Gm2053 False +ENSMUSG00000103922 Gm6123 False +ENSMUSG00000033845 Mrpl15 False +ENSMUSG00000025903 Lypla1 False +ENSMUSG00000104217 Gm37988 False +ENSMUSG00000033813 Tcea1 False +ENSMUSG00000062588 Gm6104 False +ENSMUSG00000002459 Rgs20 False +ENSMUSG00000091305 Gm17100 False +ENSMUSG00000091665 Gm17101 False +ENSMUSG00000033793 Atp6v1h False +ENSMUSG00000104352 Gm7182 False +ENSMUSG00000025905 Oprk1 False +ENSMUSG00000103936 Gm36965 False +ENSMUSG00000033774 Npbwr1 False +ENSMUSG00000103090 Gm19214 False +ENSMUSG00000025907 Rb1cc1 False +ENSMUSG00000087247 Alkal1 False +ENSMUSG00000103355 Gm2147 False +ENSMUSG00000102706 Gm7417 False +ENSMUSG00000103845 Gm19026 False +ENSMUSG00000033740 St18 False +ENSMUSG00000104385 Gm7449 False +ENSMUSG00000102135 Gm37108 False +ENSMUSG00000103282 Gm37275 False +ENSMUSG00000102534 Gm37225 False +ENSMUSG00000102213 Gm37489 False +ENSMUSG00000103629 Gm5694 False +ENSMUSG00000051285 Pcmtd1 False +ENSMUSG00000098201 Gm26983 False +ENSMUSG00000048538 Gm9826 False +ENSMUSG00000103709 Nras-ps2 False +ENSMUSG00000102768 Gm19002 False +ENSMUSG00000103498 Gm18984 False +ENSMUSG00000102320 Gm37791 False +ENSMUSG00000104226 Gm7470 False +ENSMUSG00000103903 Rps2-ps2 False +ENSMUSG00000103557 Gm38216 False +ENSMUSG00000025909 Sntg1 False +ENSMUSG00000086235 Gm16284 False +ENSMUSG00000084353 Gm15452 False +ENSMUSG00000103933 Gm36964 False +ENSMUSG00000086195 Gm6152 False +ENSMUSG00000104504 Gm7445 False +ENSMUSG00000066693 Gm7493 False +ENSMUSG00000103819 Gm38008 False +ENSMUSG00000101571 Gm6187 False +ENSMUSG00000104428 Gm18299 False +ENSMUSG00000102272 Gm7512 False +ENSMUSG00000103411 Gm18300 False +ENSMUSG00000061024 Rrs1 False +ENSMUSG00000025911 Adhfe1 False +ENSMUSG00000081441 Gm6161 False +ENSMUSG00000067879 Vxn False +ENSMUSG00000025912 Mybl1 False +ENSMUSG00000045210 Vcpip1 False +ENSMUSG00000025915 Sgk3 False +ENSMUSG00000046334 Gm6195 False +ENSMUSG00000046101 Mcmdc2 False +ENSMUSG00000099032 Tcf24 False +ENSMUSG00000025916 Ppp1r42 False +ENSMUSG00000025917 Cops5 False +ENSMUSG00000056763 Cspp1 False +ENSMUSG00000067851 Arfgef1 False +ENSMUSG00000042501 Cpa6 False +ENSMUSG00000083422 Gm15604 False +ENSMUSG00000081417 Gm15603 False +ENSMUSG00000100212 Gm5522 False +ENSMUSG00000100648 Gm28659 False +ENSMUSG00000048960 Prex2 False +ENSMUSG00000101827 Gm28686 False +ENSMUSG00000057715 A830018L16Rik False +ENSMUSG00000099845 Gm29273 False +ENSMUSG00000101610 Gm7560 False 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/trimmed_matrix.mtx Sat Mar 29 07:36:12 2025 +0000 @@ -0,0 +1,8120 @@ +%%MatrixMarket matrix coordinate real general +% +500 1000 8117 +14 2 2 +17 2 1 +62 2 1 +111 2 5E-1 +115 2 1 +151 2 2 +184 2 1 +191 2 5E-1 +193 2 0 +194 2 1 +195 2 2.5 +196 2 9.306E-3 +294 2 1 +304 2 1 +315 2 1 +328 2 1 +330 2 1 +355 2 1 +362 2 1 +370 2 2 +371 2 1 +404 2 1 +427 2 1 +435 2 1 +437 2 1 +469 2 1 +470 2 4 +473 2 5E-1 +474 2 1 +493 2 1 +14 3 1 +107 3 2 +111 3 1 +151 3 2 +190 3 1E-6 +191 3 5E-1 +193 3 6 +194 3 3.5 +195 3 2.5 +242 3 1 +256 3 1 +281 3 1 +293 3 1 +314 3 1 +328 3 3 +336 3 1 +366 3 1 +451 3 1 +470 3 5 +473 3 4 +107 4 1 +111 4 2 +115 4 3 +151 4 5 +191 4 1 +193 4 6 +194 4 5 +195 4 2.5 +242 4 1 +255 4 1 +271 4 1 +272 4 1 +282 4 1 +304 4 1 +311 4 1 +314 4 1 +315 4 1 +328 4 2.5E-1 +336 4 1 +370 4 1 +390 4 1 +470 4 2 +473 4 4 +474 4 3 +498 4 2 +16 5 5E-1 +17 5 5E-1 +40 5 1 +74 5 1 +94 5 3 +107 5 3 +111 5 5E-1 +114 5 1 +115 5 2 +151 5 1 +191 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